G465119


Basic Information

Item Value
gene id G465119
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 1923713 ~ 1924820 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU528198
aatttacattgatttacattaaaacatatattttagtgtatttagtaaatattttcttaactaattttcttaaaactgcattgttggttaagggcttgtaagtcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtatttagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcattcagcatttcacggtac

Function

NR:

description
ceramide synthase 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU528198 True 806 lncRNA 0.38 2 1923713 1924820

Neighbor

gene id symbol gene type direction distance location
slc4a4a LOC101484802 coding upstream 805124 775664 ~ 1118589 (+)
LOC118964805 NA coding upstream 921425 997029 ~ 1002288 (+)
tars1 LOC106585996 coding upstream 1321194 564277 ~ 602519 (+)
LOC118964804 NA coding upstream 1367820 555164 ~ 555893 (+)
LOC110525134 NA coding upstream 1369459 551781 ~ 554254 (+)
LOC110525062 LOC106570947 coding downstream 77268 2002088 ~ 2105141 (+)
LOC110525063 LOC106570939 coding downstream 224420 2149240 ~ 2199894 (+)
zfr zfr coding downstream 433802 2342330 ~ 2451362 (+)
mtmr12 mtmr12 coding downstream 485411 2410231 ~ 2446470 (+)
LOC110525158 LOC106570936 coding downstream 541654 2466474 ~ 2489239 (+)
G465086 NA non-coding upstream 58649 1841960 ~ 1865064 (+)
G465080 NA non-coding upstream 93078 1829368 ~ 1830635 (+)
G465077 NA non-coding upstream 96585 1826096 ~ 1827128 (+)
G465056 NA non-coding upstream 159554 1763784 ~ 1764159 (+)
G465026 NA non-coding upstream 237576 1682481 ~ 1686137 (+)
G465145 NA non-coding downstream 34450 1959270 ~ 1961473 (+)
G465202 NA non-coding downstream 135151 2059971 ~ 2060253 (+)
G465222 NA non-coding downstream 189070 2113890 ~ 2116021 (+)
G465248 NA non-coding downstream 250103 2174923 ~ 2175439 (+)
G465261 NA non-coding downstream 272923 2197743 ~ 2198832 (+)
G464705 NA other upstream 694614 1228705 ~ 1229099 (+)
LOC110525138 rufy3 other upstream 1464707 442716 ~ 549899 (+)
G463813 NA other upstream 1655562 265409 ~ 268151 (+)
LOC118964799 isca1 other upstream 1871223 43896 ~ 52580 (+)
G465203 NA other downstream 137508 2062328 ~ 2064067 (+)
G465355 NA other downstream 480299 2405119 ~ 2406090 (+)
LOC110525071 LOC106585963 other downstream 880563 2743964 ~ 2866482 (+)
G465578 NA other downstream 1054022 2978842 ~ 2982425 (+)

Expression


Co-expression Network