G465145


Basic Information

Item Value
gene id G465145
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 1959270 ~ 1961473 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU528236
acatcaattgaatccattctgaatttaggctgtaacataatatttaataaatcaatGGGGGTATAAATACTCCGAATGTACCGTACAATGGGGTTTTACATTGTGTTGCTCCTTGAACCCTTAATTAGTTAGTAAAACAACAATGAGCTGCCTTGGGATGACTCCTCCTAGGTACTGACACACAACCATTTCAAACAATACACACCGTCAACCATAGTCCCACTTCCTGCTTCCATGTCAGTTCATCCAATAGAAAAGGCAATCTTCTGTTCCTCATTACCTCAGGTCAACGTGGAGCCTGCGGGTGAGGCGGCCGCCTCAGGTCAACGTGGAGTCTAGGTGTGGGGCGGCCGCCTCAGGTCAACGTGGAGTCTGCGGGTGAGGCGGCCACCTCAGGTCAACGTGGAGTCTAGGTGTGGGGCCTCTAATTTTCTTATCCTTTCATCAACTCTGACCTACAAAGCAAGGGTCTGGCGAAAGGAATGTATCTTTACTGTCCCAGTGGTGAAGACCACAGTCTGTCCCAGTGGTGAAGACCACAGTCTGTCCCAGTGGTGAAGACCACAGTCTGTCCCAGTGGTGAAGACCACAGTCTGTCCCAGTGGTGAAGACCACAGTCTGTCCCAGTGGTGAAGACCACAGTCTGTCCCAGTGGTGAAGACCACAGTCTGTCCCAGTGGTGAAGAC
>TU528230
CGGCCGCCTCAGGTCAACGTGGAGCCTGCGGGTGGGGCGGCCGCCTCAGGTCAACGTGGAGTCTAGGTGTGGGGCGGCCGCCTCAGGTCAACGTGGAGTCTAGGTGTGGGGCGGCCGCCTCAGGTCAACGTGGAGTCTAGGTGTGGGGCCTCTAATTTTCTTATCCTTTCATCAACTCTGACCTACAAAGCAAGGGTCTGGCGAAAGGAATGTATCTTTACTGTCCCAGTGGTGAAGACCACAGTCTGTCCCAGTGGTGAAGACCACAGTCTGTCCCAGTGGTGAAGACCACAGTCTGTCCCAGTGGTGAAGACCACAGTCTGTCCCAGTGGTGAAGACCACAGTCTGTCCCAGTGGTGAAGACCACAGTCTGTCCCAGTGGTGAAGACCACAGTCTGTCCCAGTGGTGAAGAC
>TU528237
CGGCCGCCTCAGGTCAACGTGGAGCCTGCGGGTGGGGCGGCCGCCTCAGGTCAACGTGGAGTCTAGGTGTGGGGCGGCCGCCTCAGGTCAACGTGGAGTCTAGGTGTGGGGCCTCTAATTTTCTTATCCTTTCATCAACTCTGACCTACAAAGCAAGGGTCTGGCGAAAGGAATGTATCTTTACTGTCCCAGTGGTGAAGACCACAGTCTGTCCCAGTGGTGAAGACCACAGTCTGTCCCAGTGGTGAAGACCACAGTCTGTCCCAGTGGTGAAGACCACAGTCTGTCCCAGTGGTGAAGACCACAGTCTGTCCCAGTGGTGAAGACCACAGTCTGTCCCAGTGGTGAAGACCACAGTCTGTCCCAGTGGTGAAGAC
>TU528240
CGGCCGCCTCAGGTCAACGTGGAGCCTGCGGGTGGGGCGGCCGCCTCAGGTCAACGTGGAGTCTAGGTGTGGGGCGGCCGCCTCAGGTCAACGTGGAGTCTGCGGGTGAGGCGGCCACCTCAGGTCAACGTGGAGTCTAGGTGTGGGGCCTCTAATTTTCTTATCCTTTCATCAACTCTGACCTACAAAGCAAGGGTCTGGCGAAAGGAATGTATCTTTACTGTCCCAGTGGTGAAGACCACAGTCTGTCCCAGTGGTGAAGACCACAGTCTGTCCCAGTGGTGAAGACCACAGTCTGTCCCAGTGGTGAAGACCACAGTCTGTCCCAGTGGTGAAGACCACAGTCTGTCCCAGTGGTGAAGACCACAGTCTGTCCCAGTGGTGAAGACCACAGTCTGTCCCAGTGGTGAAGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU528236 False 687 lncRNA 0.49 3 1959270 1961473
TU528230 False 414 lncRNA 0.58 2 1961023 1961473
TU528237 False 377 lncRNA 0.57 2 1961023 1961473
TU528240 True 414 lncRNA 0.58 2 1961023 1961473

Neighbor

gene id symbol gene type direction distance location
slc4a4a LOC101484802 coding upstream 840681 775664 ~ 1118589 (+)
LOC118964805 NA coding upstream 956982 997029 ~ 1002288 (+)
tars1 LOC106585996 coding upstream 1356751 564277 ~ 602519 (+)
LOC118964804 NA coding upstream 1403377 555164 ~ 555893 (+)
LOC110525134 NA coding upstream 1405016 551781 ~ 554254 (+)
LOC110525062 LOC106570947 coding downstream 40615 2002088 ~ 2105141 (+)
LOC110525063 LOC106570939 coding downstream 187767 2149240 ~ 2199894 (+)
zfr zfr coding downstream 397149 2342330 ~ 2451362 (+)
mtmr12 mtmr12 coding downstream 448758 2410231 ~ 2446470 (+)
LOC110525158 LOC106570936 coding downstream 505001 2466474 ~ 2489239 (+)
G465119 NA non-coding upstream 34450 1923713 ~ 1924820 (+)
G465086 NA non-coding upstream 94206 1841960 ~ 1865064 (+)
G465080 NA non-coding upstream 128635 1829368 ~ 1830635 (+)
G465077 NA non-coding upstream 132142 1826096 ~ 1827128 (+)
G465056 NA non-coding upstream 195111 1763784 ~ 1764159 (+)
G465202 NA non-coding downstream 98498 2059971 ~ 2060253 (+)
G465222 NA non-coding downstream 152417 2113890 ~ 2116021 (+)
G465248 NA non-coding downstream 213450 2174923 ~ 2175439 (+)
G465261 NA non-coding downstream 236270 2197743 ~ 2198832 (+)
G465141 NA non-coding downstream 240898 2202371 ~ 2203051 (+)
G464705 NA other upstream 730171 1228705 ~ 1229099 (+)
LOC110525138 rufy3 other upstream 1500264 442716 ~ 549899 (+)
G463813 NA other upstream 1691119 265409 ~ 268151 (+)
LOC118964799 isca1 other upstream 1906780 43896 ~ 52580 (+)
G465203 NA other downstream 100855 2062328 ~ 2064067 (+)
G465355 NA other downstream 443646 2405119 ~ 2406090 (+)
LOC110525071 LOC106585963 other downstream 843910 2743964 ~ 2866482 (+)
G465578 NA other downstream 1017369 2978842 ~ 2982425 (+)

Expression


Co-expression Network