G465202


Basic Information

Item Value
gene id G465202
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 2059971 ~ 2060253 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU528310
GGGATATATTtaccagagagagacatggtcatGGATATATTTACTAGAGAGAGACATGGTCAGGGATATATTtaccagagagagacatggtcatGGATATATTTACCAGAGAGAGACATGGTCAGGGATATATTtaccagagagagacatggtcatGGATATATTTACCagagagacatggtcatggatatatttaccagagagagacatggtcatggatata
>TU528311
GGGATATATTtaccagagagagacatggtcatGGATATATTTACTAGAGAGAGACATGGTCAGGGATATATTtaccagagagagacatggtcatGGATATATTTACCAGAGAGAGACATGGTCAGGGATATATTtaccagagagagacatggtcatGGATATATTTACCAGACAGAGACATGGTCAGGGATATATTtcccagagagagacatggtcatggatatatttaccagagagagacatggtcatggatata
>TU528312
GGGATATATTtaccagagagagacatggtcatGGATATATTTACTAGAGAGAGACATGGTCAGGGATATATTtaccagagagagacatggtcatGGATATATTTACCAGAGAGACATGGTCAGGGATATATTtaccagagagagacatggtcatGGATATATTTACCAGACAGAGACATGGTCAGGGATATATTtcccagagagagacatggtcatggatatatttaccagagagagacatggtcatggatata
>TU528314
GGGATATATTtaccagagagagacatggtcatGGATATATTTACTAGAGAGAGACATGGTCAGGGATATATTtaccagagagagacatggtcatGGATATATTTACCAGAGAGACATGGTCAGGGATATATTTCCCAGAGAGACATGGTCAGGGATATATTtaccagagagagacatggtcatGGATATATTTACCagagagacatggtcatggatatatttaccagagagagacatggtcatggatata
>TU528315
GGGATATATTtaccagagagagacatggtcatGGATATATTTACTAGAGAGAGACATGGTCAGGGATATATTtaccagagagagacatggtcatGGATATATTTACCAGAGAGACATGGTCAGGGATATATTtaccagagagagacatggtcatGGATATATTTACCagagagacatggtcatggatatatttaccagagagagacatggtcatggatata
>TU528316
GGGATATATTtaccagagagagacatggtcatGGATATATTTACTAGAGAGAGACATGGTCAGGGATATATTtaccagagagagacatggtcatGGATATATTTACCAGAGAGACATGGTCAGGGATATATTTCCCAGAGAGACATGGTCAGGGATATATTtaccagagagagacatggtcatGGATATATTTACCAGagagagagacatggtcatggatatatttaccagagagagacatggtcatggatata
>TU528317
GGGATATATTtaccagagagagacatggtcatGGATATATTTACTAGAGAGAGACATGGTCAGGGATATATTtaccagagagagacATGGTCAGGGATATATTtaccagagagagacatggtcatGGATATATTTACCAGACAGAGACATGGTCAGGGATATATTtcccagagagagacatggtcatggatatatttaccagagagagacatggtcatggatata
>TU528318
GGGATATATTtaccagagagagacatggtcatGGATATATTTACTAGAGAGAGACATGGTCAGGGATATATTtaccagagagagacatggtcatGGATATATTTACCAGAGAGACATGGTCAGGGATATATTTCCCAGAGAGACATGGTCAGGGATATATTtaccagagagacatggtcatggatatatttaccagagagagacatggtcatggatata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU528310 False 223 lncRNA 0.39 3 2059971 2060253
TU528311 False 256 lncRNA 0.40 2 2059971 2060253
TU528312 False 254 lncRNA 0.40 2 2059971 2060253
TU528314 False 250 lncRNA 0.40 2 2059971 2060253
TU528315 False 221 lncRNA 0.39 3 2059971 2060253
TU528316 False 254 lncRNA 0.40 2 2059971 2060253
TU528317 False 225 lncRNA 0.40 2 2059971 2060253
TU528318 True 219 lncRNA 0.40 2 2059971 2060253

Neighbor

gene id symbol gene type direction distance location
slc4a4a LOC101484802 coding upstream 941382 775664 ~ 1118589 (+)
LOC118964805 NA coding upstream 1057683 997029 ~ 1002288 (+)
tars1 LOC106585996 coding upstream 1457452 564277 ~ 602519 (+)
LOC118964804 NA coding upstream 1504078 555164 ~ 555893 (+)
LOC110525134 NA coding upstream 1505717 551781 ~ 554254 (+)
LOC110525063 LOC106570939 coding downstream 88987 2149240 ~ 2199894 (+)
zfr zfr coding downstream 298369 2342330 ~ 2451362 (+)
mtmr12 mtmr12 coding downstream 349978 2410231 ~ 2446470 (+)
LOC110525158 LOC106570936 coding downstream 406221 2466474 ~ 2489239 (+)
pdzd2 pdzd2 coding downstream 492958 2553211 ~ 2714300 (+)
G465145 NA non-coding upstream 98498 1959270 ~ 1961473 (+)
G465119 NA non-coding upstream 135151 1923713 ~ 1924820 (+)
G465086 NA non-coding upstream 194907 1841960 ~ 1865064 (+)
G465080 NA non-coding upstream 229336 1829368 ~ 1830635 (+)
G465077 NA non-coding upstream 232843 1826096 ~ 1827128 (+)
G465222 NA non-coding downstream 53637 2113890 ~ 2116021 (+)
G465248 NA non-coding downstream 114670 2174923 ~ 2175439 (+)
G465261 NA non-coding downstream 137490 2197743 ~ 2198832 (+)
G465141 NA non-coding downstream 142118 2202371 ~ 2203051 (+)
G465263 NA non-coding downstream 145748 2206001 ~ 2206458 (+)
G464705 NA other upstream 830872 1228705 ~ 1229099 (+)
LOC110525138 rufy3 other upstream 1600965 442716 ~ 549899 (+)
G463813 NA other upstream 1791820 265409 ~ 268151 (+)
LOC118964799 isca1 other upstream 2007481 43896 ~ 52580 (+)
G465203 NA other downstream 2075 2062328 ~ 2064067 (+)
G465355 NA other downstream 344866 2405119 ~ 2406090 (+)
LOC110525071 LOC106585963 other downstream 745130 2743964 ~ 2866482 (+)
G465578 NA other downstream 918589 2978842 ~ 2982425 (+)

Expression


Co-expression Network