XLOC_024008


Basic Information

Item Value
gene id XLOC_024008
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 17528781 ~ 17535916 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049216
TTGATTAGTGATGGGGTCTGGTTCTTCTTCAGCCTCGCTGGAGTCCCTGtgctcctcttcctcctcatGAAGCTCTTCAGGTTCAGATTCAGCCTCTGCTTCCTCCTCTACAGGTTTGAACTCCTCCACAGGGGTTTCAGTTGTGAAAGCAGGCTGTACAGCTTCTTCCTCCGGTCCTTCTGGAACAAACTCTTTAACTGAAGGTGTCCGCTGTGGGTCTCCAGCTCTTACCGTTCCTCCATGATCAGTATGGCGGTGTCCTCGGCTTCCCTCCGGATGCTCTCGATCATCGGTGTCCAACGTGCGGTCTGCGTCTCCGCATCCTCCAGCTCAATGTGTGCCTGTGACAGTGTGGCCACGCTTGCTGGAAGTGACTGTTCTGGGGACCACGGTGTCTGCGGTTGGGATTGAGGTTGTGACGACGTGTCCTTCGCCAGGGCTTCATCTTCAGAATCAACCTCCTCCAGAATGAGATCTGATCCAACACCTGCTAAAGATACAGCCATGCTTGAAGCTTGTAAGAACACTTAAAATTCTGGGTTTGGTAAAATGTGCGGTAAAACACAGGTTTTTATACACCTGTCAATTTATAATTGATGGAAAAAGAATATGCGAAATATAATTAGTTTTTCTGTTGTCACCCTTTAGATTTGGATTgatattttctcaaaataagtTTTCTCCCCCTGTATTGAGTCATACATCACCACTTCATTTTATTCAATCTGTATTCTAAAGGTTTTTTTAAGAGATTTGTTCATgtatacactgttaacaattccTTGTAGAATCTAAAGttacttactggcagcagttcgccagtaatttactgtatgagccaattacagcaaaaatattaCAGCATTTGCAGCACCGATTAACTTGCTGTATATGCATTtacaatattgtatatatttaatgtaaaatatacagtatttacaatgctttaaaaaaacggTAACAAACTGCATAAGTGTCCTAGAGTGAAtttcagttcatattacagttaaacactgtttattttacaaacatcctaaacaatatatttttcttAATCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049216 True 1058 lncRNA 0.41 2 17528781 17535916

Neighbor

gene id symbol gene type direction distance location
XLOC_024007 NA coding upstream 18362 17502996 ~ 17510419 (+)
XLOC_024006 elmo3 coding upstream 57521 17423515 ~ 17471260 (+)
XLOC_024005 e2f4 coding upstream 109684 17405201 ~ 17419097 (+)
XLOC_024004 cnot1 coding upstream 181852 17313568 ~ 17346929 (+)
XLOC_024003 kdm7ab coding upstream 218480 17244532 ~ 17310301 (+)
XLOC_024009 vac14 coding downstream 53990 17589906 ~ 17613025 (+)
XLOC_024010 galnt18a coding downstream 153649 17689565 ~ 17825514 (+)
XLOC_024011 PYURF coding downstream 311138 17847054 ~ 17849574 (+)
XLOC_024012 pth1a coding downstream 324882 17860798 ~ 17861696 (+)
XLOC_024013 btbd10a coding downstream 326422 17862338 ~ 17892830 (+)
XLOC_023973 CR762411.1 misc upstream 2310672 15217824 ~ 15218109 (+)
XLOC_024002 NA non-coding upstream 568280 16958172 ~ 16960501 (+)
XLOC_023998 NA non-coding upstream 691832 16829884 ~ 16836949 (+)
XLOC_023997 BX004976.1 non-coding upstream 756873 16771791 ~ 16771908 (+)
XLOC_023992 CR376785.1 non-coding upstream 1012219 16516154 ~ 16516562 (+)
XLOC_024017 BX901919.1 non-coding downstream 561831 18097747 ~ 18097861 (+)
XLOC_024018 NA non-coding downstream 571476 18107392 ~ 18250076 (+)
XLOC_024019 NA non-coding downstream 773399 18309315 ~ 18314927 (+)
XLOC_024020 NA non-coding downstream 823112 18359028 ~ 18361288 (+)
XLOC_024027 NA non-coding downstream 1208105 18744021 ~ 18745029 (+)

Expression


Co-expression Network