G465222


Basic Information

Item Value
gene id G465222
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 2113890 ~ 2116021 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU528342
ATTCGCTTAAGGCAATACAAACATAGGTGGACCCCATTCAGGTTTGAAGGAAGCAAACTGTTTTCTTTGTTGCGTGGGGATTGCCAGGACTCTATTTCatgttaaataaaggtaatgaTGTTCAACTGTAATGTCACAAAGTAGGAAACGACCCTACACTCCAGGTGCCAGTTCTGTTATTGAAGGTGGTTGTAGTCTGTTATTAATTTCCAGTGTTTACTTGAACAAAAAGTTTTCTTCAGGAAATCAGGCCATGATATGGATGTAAAAGGTTTTCAGATATACAAGGCTATATTCCAAAGTCCATAGTAGAATACCACTTAGAATGTCTGGAAGCATAGATCACGTGGCTTCATTCTAAGCAGCATGCACATTAAGGAGGAGGTACTAAAGAGCAAACATTCTGTCATAACTATGTCACTTCCTGTGGAGTCATTAGAGCATGTGTATCCAGTCTGAtgcactctgctctgcctctacTATATTGATGTTTTAAGAGGTCCTAAAGTTTTACAAGGGTCCCTTCTTGATATTATATGGAGATCCGATGCTCCAACAAAAGCAATGTAGAAGGAACCCAGCTGCAAAGCTGTGTGGATCGATTGTGGATTCATGTCCAAGTTCTGTGTGGATCGATTGTGGATTCATGTCCAAGTTCTGTGCGGATCGATTGTGGATTCATGTCCAAGTTCTGTGCGGATCGATTATAGATTCATTGTCCATGTTCTAACTATGTGGGAGTAAAATATAATGCAAACATTCAGTTCATTCATGTCAAGATTAGTGGCAACGTTTGAGTGGATCTCACATAGCTCAGGTCCGGACTGAGCCTTGTGTACATGCTGTTGATATGGAATCCAtattaatgtaggagaatgtaTAATATATGTTAATCCGTACTCAATGTAGCAAAACCACACAACGATTTacatcagcaacaacaaaaaaacgactACCCCATTATTTTAGCGTGAAGATGATACTTCCTGAAGGACAGATATGTAGTATATTTATGGAGGAAGTCAAATGGGGCACAAAAaacatttgcatttttttttcctttttataATAGCCTTTTGATAGAACATTTAAAGATATATATTCTATTTGTTATCACAGCACTGGCACAGTCTATCTTTCACGGTTGTTTCTTCCCCATTCCCTTCCTGTACGGCTCGGCTCTGGATGCGGGACAACTCTAAACATTTAGCCAATCATTGAGTAGCTTTTTGCCGACTGAATCAACAAGAACATCTAGTAATTCTCGTAAccaaagatatatattttttaaacagcaAGAAAGAGATGCCAAACATCACAGAGAACAAGCCGAGTATAACAAAGCTATAACAAGAGGATTAATAAGCGGGGGGAAAAGATTCTCACTTATTGTAGCTACTTATAACTTAAATATAATGTGGTTTACTGGTAGATTTAAGGTCCTATAAGGGCTGTGTATGAGGCTTTCAATATTTCTTTTATTTTGACTTTTGTCCATTTTGGATGAATCCAGTGCATTATGGGAATGCTGGATTGTGGTGCTCAGGGGTTCGTTTGTTTTGTCATTTGATGTGTAG

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU528342 True 1577 lncRNA 0.38 3 2113890 2116021

Neighbor

gene id symbol gene type direction distance location
LOC110525062 LOC106570947 coding upstream 8749 2002088 ~ 2105141 (+)
slc4a4a LOC101484802 coding upstream 995301 775664 ~ 1118589 (+)
LOC118964805 NA coding upstream 1111602 997029 ~ 1002288 (+)
tars1 LOC106585996 coding upstream 1511371 564277 ~ 602519 (+)
LOC118964804 NA coding upstream 1557997 555164 ~ 555893 (+)
LOC110525063 LOC106570939 coding downstream 33219 2149240 ~ 2199894 (+)
zfr zfr coding downstream 242601 2342330 ~ 2451362 (+)
mtmr12 mtmr12 coding downstream 294210 2410231 ~ 2446470 (+)
LOC110525158 LOC106570936 coding downstream 350453 2466474 ~ 2489239 (+)
pdzd2 pdzd2 coding downstream 437190 2553211 ~ 2714300 (+)
G465202 NA non-coding upstream 53637 2059971 ~ 2060253 (+)
G465145 NA non-coding upstream 152417 1959270 ~ 1961473 (+)
G465119 NA non-coding upstream 189070 1923713 ~ 1924820 (+)
G465086 NA non-coding upstream 248826 1841960 ~ 1865064 (+)
G465080 NA non-coding upstream 283255 1829368 ~ 1830635 (+)
G465248 NA non-coding downstream 58902 2174923 ~ 2175439 (+)
G465261 NA non-coding downstream 81722 2197743 ~ 2198832 (+)
G465141 NA non-coding downstream 86350 2202371 ~ 2203051 (+)
G465263 NA non-coding downstream 89980 2206001 ~ 2206458 (+)
G465266 NA non-coding downstream 94052 2210073 ~ 2210280 (+)
G465203 NA other upstream 49823 2062328 ~ 2064067 (+)
G464705 NA other upstream 884791 1228705 ~ 1229099 (+)
LOC110525138 rufy3 other upstream 1654884 442716 ~ 549899 (+)
G463813 NA other upstream 1845739 265409 ~ 268151 (+)
LOC118964799 isca1 other upstream 2061400 43896 ~ 52580 (+)
G465355 NA other downstream 289098 2405119 ~ 2406090 (+)
LOC110525071 LOC106585963 other downstream 689362 2743964 ~ 2866482 (+)
G465578 NA other downstream 862821 2978842 ~ 2982425 (+)
G466813 NA other downstream 1656843 3772864 ~ 3773340 (+)

Expression


Co-expression Network