XLOC_024009 (vac14)


Basic Information

Item Value
gene id XLOC_024009
gene name vac14
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 17589906 ~ 17613025 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047654
TGCCCACAAAATTAacaattagtattattattttttttatatcttactAAAAGAGTATTGACTATGTATGTACAATGAATAATTCTAAATGAAACTTCTTTTACCCCGTCAAACATTTCCAGAGAGCATGTGACTCTTCTGACGTAATCAAAACAAATCCATTGATCGGCGCTCGATTCACCAGGCCCTGATGTTTGTAGGAAGTCATGTGAGCCGGGGTATATGGCGGTTATGGTCTATCCCTTACATTGAAAAGCACTGTTATTTACGACTGTCATCACCCGAGGAGGAATAACTATCTGGCTTATGTTGTGTACGGCGTAGTCGCGTTTTGTCGGACAGTCTTCTATGCTCGTTAAGCTCATATCGTAGTTCAGGCTTTTATTTAGCTTCGTCTGTACGTAACTGTTCTCATCCTCCGTTTCAGTCTAACGTCGCAGACAGCAGCTCCTGTCATTTAATAAGTGATGCCCGAGAGGAAACACGTTTTAGGGCGTCGTCTTGTTTGTATTATAATAAGCGCGTGATGAGGAAAATCtcgatttcatttattcattcagtcgtAGGTTAACCGATCTGTCATCCTGTGCATTCACTGAGGTATTCGTTTTAACAGCACACACTTCTGTTCTATGCGTCATATAAGGGTGTTTTCTCAAATATTTAGTCAAAATGAATACAGAAAAGGATTTTTCTCCACTGACACCAAATATTGTGAGGGCTCTCAACGACAAGCTGTACGAGAAGAGGAAGGTTGCAGCTCTCGAGATTGAAAAGCTTGTGCGTGAATTTGTGGCTCAAAACAACTCTGCTCAGATCAGACATGTCATCCAGATACTGGCCACAGAGTTTGCTCTGTCCCAGCACCCTCACAGCAGAAAAGGAGGCCTCATTGGGCTGGCGGCCTGCTCCATTGCCTTGGGAAAAGATTCGGGATTGTACCTGAAGGAGCTCATTGATCCTGTTCTGACATGTTTCAATGACTCTGACAGCCGTCTGCGCTACTACGCCTGTGAGGCCCTGTATAACATAGTGAAAGTCGCCCGAGGAGCAGTTCTGCCCCATTTCAATGTGCTGTTTGATGGGCTTAGTAAGCTTGCAGCAGATCCTGATCCCAATGTAAAGAGTGGCTCTGAGCTCCTTGACCGCCTGCTTAAGGACATCGTAACAGAGAGCAACAAGTTTGACCTGGTGGCTTTTGTCCCCCTGTTGCGTGAGAGGATTTACTCCAATAACCAATATGCTCGTCAATTCATTATCTCCTGGATTCATGTGTTGGAGTCTGTTCCTGATATCAACCTCCTGGATTACCTGCCGGAAATACTAGACGGACTCTTCCAGATTCTTGGAGACAGCAGCAAAGAGATCAGGCGGATGTGTGAGCTGGTTTTGGGGGAATTCCTGAAAGAGATTAAGAAGAATCCTTCCAGTGTCAAATTTGCAGAAATGGCCAACATCTTGGTCATCCACTGTCAAGTGTCTGATGAATCAAAGTCCACTAACGATCTTATCCAGCTGACGTCTATGACATGGATGAGAGAGTTTATTCAGCTTGCTGGGAGAGTTGTGCTGCCATATTCTTCTGGCATATTGACAGCAGTGCTGCCTTGCCTGTCCTACGATGACCGCAAAAAGAGTACTAAAGAAGCAGCCAGTGCGTGTAACCACAGCCTGATGAAGCTTGTGACTccagaggatgatgaagatgatgaagaatcACAGACAAAATCTTCCCCTCCAAGCGATGAGGCTCCATCTAAAAAAGAGGGAGATCTGAATGATTCCCTAAATGAGTCTCAGGAGTCCGTAGGCTTCAGTAACATCTCTTTCTTCACTCCAGCAAGTTCTGACAGGTCTGCGGTTACTCTGGATCTGGATGGCATCGTGCAAGTGCTGGACAGACATTTACACGATTCATCCACCGGAATGATGACGCGCATCGCTGTGTTGAAGTGGCTCTACCATTTATACATCAAGACCCCTCGCAAGATGTTCAAGCACACAGATAGTTTGTTCCCCATGTTATTGAAGACACTATCAGATGAGTCGGATGAAGTGATTTTAAAAGACTTGGAGGTTTTAGCAGAGATTGCATCATCACCTGCTGGTCAGACGGACACCTCTGGGTCGTGCGATATCTCGGATAGTAAAACTGAGCTGCATATTCCAGGTGGGGTTAGAGATGGGCAGCCAGTGGTGGTCGGTTCTAAGATGACAGATTTATCGCCCTCAACTCCCAGCATGAATTCATACTTCTACAAGTTCATGATTAACTTGCTCAAGCGCTTCAGTTTGGAGAGAAAACTTCTAGAAATGAGAGGGGCCTTCATCATCAGGCAGCTCTGTCTCCTCCTGCACGCCGAGAATATATTTCACTCGATGGCAGATATTTTACTCAAGGAAGAGGATCTGAAGTTTGCCTCCACAATGGTGCAGACGCTGAACACTATTCTGCTTACTTCAGCCGAACTCTTCCAGCTGCGGAACCAGCTCAAGGACTTGCGCACACAGGAAAGCTGTGCTCTCTTCTGTTGTCTCTATCGCTCTTGGTGTCACAATCCAGTGGCCACTGTGTCCCTCTGCTTCCTCACCCAGAACTACCGGCATGCCTACGACCTCATCCAGAAATTTGGAGATCTAGAGGTGACTGTGGACTTCCTCATGGAGGTGGATAAACTGGTCCAGCTAATAGAGAGCCCCATCTTCACCTACCTTCGCCTGCAGCTGCTGGATGTTGAGCATAACCCGTACCTCATCAAGGCTCTGTACGGCCTGCTGATGCTGCTTCCTCAGAGTCAGGCATTTCAGCTGCTCTCGCATCGCCTCAGCTGCGTGCCAAACCCTGAGCTCATGCGGACGCTGGAAGACCAAAAGGTGGCCGTCAAAGACAAACATTTAGCCCAGCCGCACATCGACTACAGCGAACTCCTCCAGCATTTTGACCGAGTCCAGAGCAAACACTTGGAAGTGAGGCATCAGAGGACGGGCCGATCTGAGCATCCAGACAGGAAGCTGATGTAAACGGTTACAAGTGAGTCTGAAAAGATACTACACAACAGACTGGAGATCTCAGCTCAACCTATAGTAGACGCTTTGTTCAGATTTTAATGTATTCCAACTACTACAGACATGAGGGACTTCAGTGTGCTTTATTTTTATGCTACGTGAAGTGCTTTATGTTCAGGCGCTTTGAGTCGATACGTTACGAATTAAGCGTCAACCTAAACTATTTGTACAGAACCGTGCACCAAGCCCTGGATGTTTATTATTAGGAGCTTTTAATCTATAAAAAGATCTTCTCATGACGTACTGTAAATGAGTATTGTTTTTTGTATTACGATTTTATCTATTCTCTGCATTTTGGATATTTGGTTTATCCTCTGCATTCCCATACAGTCGGAGTCTATTTGTTGTTCATTACCTCATGTTTTACATATGGCCTTATGTAAATGCAAGCCATCTCtctgtaaaatgaaaaaaaatgctcAAATAAAGTGGACCATGATCAATACTCTTTGAATTATGTTGTTTTTAATCcccatgactaggcccacacagaatctgtgcagatttttagctcatcattgattcagtttatttttttgtgtaaatgtgtgtacatttatatttattcagcttttaaattaatttcagtataatgttttgactgatatgaaaatgttcatatgatttatttacaatagtttgtaaagtaatattttcagttttttagtagagatattatatgagaaacttgctttgtttaccaaataaataaataaataaataaataaataaataaataaatctaattggatttgcattgtaaacattaatgacaagtttaaaatgtattactttttagttcatgTATTAGGGGTATTTTGGAAGttatacttccaaaatcattATGCatgaatctgcagatttttaataaaatttaaaaataaataatccttAATTAGTAATTCTTTGAGAGTGGTACCTTTTTTTTTAGCTATATTACACTTTTTTATttgactaaataaaaataaaagtgtttctcCCCGTcggggaatcgaaccccggtcttccgcgtgacaggcggagatactgtccactatactaacgacgATGTAACCATGCACTGCTTGTGGCACATAGGTCGAATGAGGTAGGgagcaaaaaaacattttttttttgacttggTAAACGACCACGTAGTTGACCGAGGTTTGATTTTCTACTGAAAAGAGATTGTTGATATGTTTTTTTATCATCATAGCAACAAAATCTTACATTAACAATAAGTTAccgaaaaaaacatttacatttctttTAGCTAAATTACATTTACCAAAGACAAAAAAGTGACAGAGATATTGTTCACTGTGCTAAAGAGGAAGTAACAAAACTTATAAATTTCTTTACATATATTACACTTTTTGTGGAAGAAAAAAATTACGATTTTATCTATTCTCTGCATTTAGGATATTTGGTTTATCCTCTGCATTCCCATACAGTCGGAGTCTATTTGTTGTTCATTACATCATGTTTTACATATGGCCTTATGTAAAGCCATCTCtctgtaaaatgaaaaaaaaagctcaaataaaGTGGACCATGATCAATACTCTTTGAATTATGTTGTTTTTAATCcccatgactaggcccacacagaatctgtgcagatttttagctcatcattgattctgtttatttacttgtgtaaatgtgtgtacatttatatttattcagcttttaaattaatttcagtataatgttttgactgatatgaaaatgttcatatgatttatttacaatagtttgtaaagtaatattttcagttttttagtagagatattatatgagaaacttgctttgtttaccaaataaataaataaatctaattagatttgcattgtaaacattaaagacaagtttaaaatgtattactttttagttcatgTATTAGGGGTATTAGTTATAATACTTCCAAAATCATTACGCATAAATCTGgagatttttaataaaattctgcgcagaaatagcaaaaaatgtttgcagattccatctggccctacccATGACACAACTTGATGTCGATTTGGGCCAAAAAGAGAATAAACATTCTTattaaaaaagcagtttttaataaaagttttttatttactaGTGCTTTTTTGGAAGTTTAAGTGCTGTGGggttattttgtaatattatgtattatttaccattttttaaaataaaa
>TCONS_00047655
GATGTTTGTAGGAAGTCATGTGAGCCGGGGTATATGGCGGTTATGGTCTATCCCTTACATTGAAAAGCACTGTTATTTACGACTGTCATCACCCGAGGAGGAATAACTATCTGGCTTATGTTGTGTACGGCGTAGTCGCGTTTTGTCGGACAGTCTTCTATGCTCGTTAAGCTCATATCGTAGTTCAGGCTTTTATTTAGCTTCGTCTGTACGTAACTGTTCTCATCCTCCGTTTCAGTCTAACGTCGCAGACAGCAGCTCCTGTCATTTAATAAGTGATGCCCGAGAGGAAACACGTTTTAGGGCGTCGTCTTGTTTGTATTATAATAAGCGCGTGATGAGGAAAATCtcgatttcatttattcattcagtcgtAGGTTAACCGATCTGTCATCCTGTGCATTCACTGAGGTATTCGTTTTAACAGCACACACTTCTGTTCTATGCGTCATATAAGGGTGTTTTCTCAAATATTTAGTCAAAATGAATACAGAAAAGGATTTTTCTCCACTGACACCAAATATTGTGAGGGCTCTCAACGACAAGCTGTACGAGAAGAGGAAGGTTGCAGCTCTCGAGATTGAAAAGCTTGTGCGTGAATTTGTGGCTCAAAACAACTCTGCTCAGATCAGACATGTCATCCAGATACTGGCCACAGAGTTTGCTCTGTCCCAGCACCCTCACAGCAGAAAAGGAGGCCTCATTGGGCTGGCGGCCTGCTCCATTGCCTTGGGAAAAGATTCGGGATTGTACCTGAAGGAGCTCATTGATCCTGTTCTGACATGTTTCAATGACTCTGACAGCCGTCTGCGCTACTACGCCTGTGAGGCCCTGTATAACATAGTGAAAGTCGCCCGAGGAGCAGTTCTGCCCCATTTCAATGTGCTGTTTGATGGGCTTAGTAAGCTTGCAGCAGATCCTGATCCCAATGTAAAGAGTGGCTCTGAGCTCCTTGACCGCCTGCTTAAGGACATCGTAACAGAGAGCAACAAGTTTGACCTGGTGGCTTTTGTCCCCCTGTTGCGTGAGAGGATTTACTCCAATAACCAATATGCTCGTCAATTCATTATCTCCTGGATTCATGTGTTGGAGTCTGTTCCTGATATCAACCTCCTGGATTACCTGCCGGAAATACTAGACGGACTCTTCCAGATTCTTGGAGACAGCAGCAAAGAGATCAGGCGGATGTGTGAGCTGGTTTTGGGGGAATTCCTGAAAGAGATTAAGAAGAATCCTTCCAGTGTCAAATTTGCAGAAATGGCCAACATCTTGGTCATCCACTGTCAAGTGTCTGATGAATCAAAGTCCACTAACGATCTTATCCAGCTGACGTCTATGACATGGATGAGAGAGTTTATTCAGCTTGCTGGGAGAGTTGTGCTGCCATATTCTTCTGGCATATTGACAGCAGTGCTGCCTTGCCTGTCCTACGATGACCGCAAAAAGAGTACTAAAGAAGCAGCCAGTGCGTGTAACCACAGCCTGATGAAGCTTGTGACTccagaggatgatgaagatgatgaagaatcACAGACAAAATCTTCCCCTCCAAGCGATGAGGCTCCATCTAAAAAAGAGGGAGATCTGAATGATTCCCTAAATGAGTCTCAGGAGTCCGTAGGCTTCAGTAACATCTCTTTCTTCACTCCAGCAAGTTCTGACAGGTCTGCGGTTACTCTGGATCTGGATGGCATCGTGCAAGTGCTGGACAGACATTTACACGATTCATCCACCGGAATGATGACGCGCATCGCTGTGTTGAAGTGGCTCTACCATTTATACATCAAGACCCCTCGCAAGATGTTCAAGCACACAGATAGTTTGTTCCCCATGTTATTGAAGACACTATCAGATGAGTCGGATGAAGTGATTTTAAAAGACTTGGAGGTTTTAGCAGAGATTGCATCATCACCTGCTGGTCAGACGGACACCTCTGGGTCGTGCGATATCTCGGATAGTAAAACTGAGCTGCATATTCCAGGTTCTAAGATGACAGATTTATCGCCCTCAACTCCCAGCATGAATTCATACTTCTACAAGTTCATGATTAACTTGCTCAAGCGCTTCAGTTTGGAGAGAAAACTTCTAGAAATGAGAGGGGCCTTCATCATCAGGCAGCTCTGTCTCCTCCTGCACGCCGAGAATATATTTCACTCGATGGCAGATATTTTACTCAAGGAAGAGGATCTGAAGTTTGCCTCCACAATGGTGCAGACGCTGAACACTATTCTGCTTACTTCAGCCGAACTCTTCCAGCTGCGGAACCAGCTCAAGGACTTGCGCACACAGGAAAGCTGTGCTCTCTTCTGTTGTCTCTATCGCTCTTGGTGTCACAATCCAGTGGCCACTGTGTCCCTCTGCTTCCTCACCCAGAACTACCGGCATGCCTACGACCTCATCCAGAAATTTGGAGATCTAGAGGTGACTGTGGACTTCCTCATGGAGGTGGATAAACTGGTCCAGCTAATAGAGAGCCCCATCTTCACCTACCTTCGCCTGCAGCTGCTGGATGTTGAGCATAACCCGTACCTCATCAAGGCTCTGTACGGCCTGCTGATGCTGCTTCCTCAGAGTCAGGCATTTCAGCTGCTCTCGCATCGCCTCAGCTGCGTGCCAAACCCTGAGCTCATGCGGACGCTGGAAGACCAAAAGGTGGCCGTCAAAGACAAACATTTAGCCCAGCCGCACATCGACTACAGCGAACTCCTCCAGCATTTTGACCGAGTCCAGAGCAAACACTTGGAAGTGAGGCATCAGAGGACGGGCCGATCTGAGCATCCAGACAGGAAGCTGATGTAAACGGTTACAAGTGAGTCTGAAAAGATACTACACAACAGACTGGAGATCTCAGCTCAACCTATAGTAGACGCTTTGTTCAGATTTTAATGTATTCCAACTACTACAGACATGAGGGACTTCAGTGTGCTTTATTTTTATGCTACGTGAAGTGCTTTATGTTCAGGCGCTTTGAGTCGATACGTTACGAATTAAGCGTCAACCTAAACTATTTGTACAGAACCGTGCACCAAGCCCTGGATGTTTATTATTAGGAGCTTTTAATCTATAAAAAGATCTTCTCATGACGTACTGTAAATGAGTATTGTTTTTTGTATTACGATTTTATCTATTCTCTGCATTTTGGATATTTGGTTTATCCTCTGCATTCCCATACAGTCGGAGTCTATTTGTTGTTCATTACCTCATGTTTTACATATGGCCTTATGTAAATGCAAGCCATCTCtctgtaaaatgaaaaaaaatgctcAAATAAAGTGGACCATGATCAA
>TCONS_00047656
CTCAAGCGCTTCAGTTTGGAGAGAAAACTTCTAGAAATGAGAGGGGCCTTCATCATCAGGCAGCTCTGTCTCCTCCTGCACGCCGAGAATATATTTCACTCGATGGCAGATATTTTACTCAAGGAAGAGGATCTGAAGTTTGCCTCCACAATGGTGCAGACGCTGAACACTATTCTGCTTACTTCAGCCGAACTCTTCCAGCTGCGGAACCAGCTCAAGGACTTGCGCACACAGGAAAGCTGTGCTCTCTTCTGTTGTCTCTATCGCTCTTGGTGTCACAATCCAGTGGCCACTGTGTCCCTCTGCTTCCTCACCCAGAACTACCGGCATGCCTACGACCTCATCCAGAAATTTGGAGATCTAGAGGTGACTGTGGACTTCCTCATGGAGGTGGATAAACTGGTCCAGCTAATAGAGAGCCCCATCTTCACCTACCTTCGCCTGCAGCTGCTGGATGTTGAGCATAACCCGTACCTCATCAAGGCTCTGTACGGCCTGCTGATGCTGCTTCCTCAGAGTCAGGCATTTCAGCTGCTCTCGCATCGCCTCAGCTGCGTGCCAAACCCTGAGCTCATGCGGACGCTGTAAGTAGGCCTGTAGACATCATTAAAGATGCAGTCTATAAGTTTCACCACTACAAAGTTGAAGGCATAAGCTgacaaataaaaccaaaacatgGCAAAG

Function

symbol description
vac14 Predicted to be involved in phosphatidylinositol biosynthetic process and positive regulation of kinase activity. Predicted to be located in endosome and membrane. Predicted to be part of PAS complex. Predicted to be active in endosome membrane. Predicted to be extrinsic component of vacuolar membrane. Human ortholog(s) of this gene implicated in striatonigral degeneration. Orthologous to human VAC14 (VAC14 component of PIKFYVE complex).

GO:

id name namespace
GO:0033674 positive regulation of kinase activity biological_process
GO:0006661 phosphatidylinositol biosynthetic process biological_process
GO:0000306 extrinsic component of vacuolar membrane cellular_component
GO:0005768 endosome cellular_component
GO:0070772 PAS complex cellular_component
GO:0005774 vacuolar membrane cellular_component
GO:0010008 endosome membrane cellular_component
GO:0016020 membrane cellular_component

KEGG:

id description
ko05203 Viral carcinogenesis
ko05166 Human T-cell leukemia virus 1 infection

ZFIN:

id description
ZDB-GENE-040912-82 Predicted to be involved in phosphatidylinositol biosynthetic process and positive regulation of kinase activity. Predicted to be located in endosome and membrane. Predicted to be part of PAS complex. Predicted to be active in endosome membrane. Predicted to be extrinsic component of vacuolar membrane. Human ortholog(s) of this gene implicated in striatonigral degeneration. Orthologous to human VAC14 (VAC14 component of PIKFYVE complex).

Ensembl:

ensembl_id ENSDARG00000014303

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047654 False 5230 mRNA 0.39 19 17589906 17613025
TCONS_00047655 False 3287 mRNA 0.46 19 17590095 17611304
TCONS_00047656 True 684 processed_transcript 0.50 5 17605479 17608731

Neighbor

gene id symbol gene type direction distance location
XLOC_024008 NA coding upstream 53990 17528781 ~ 17535916 (+)
XLOC_024007 NA coding upstream 79487 17502996 ~ 17510419 (+)
XLOC_024006 elmo3 coding upstream 118646 17423515 ~ 17471260 (+)
XLOC_024005 e2f4 coding upstream 170809 17405201 ~ 17419097 (+)
XLOC_024004 cnot1 coding upstream 242977 17313568 ~ 17346929 (+)
XLOC_024010 galnt18a coding downstream 76540 17689565 ~ 17825514 (+)
XLOC_024011 PYURF coding downstream 234029 17847054 ~ 17849574 (+)
XLOC_024012 pth1a coding downstream 247773 17860798 ~ 17861696 (+)
XLOC_024013 btbd10a coding downstream 249313 17862338 ~ 17892830 (+)
XLOC_024014 borcs5 coding downstream 307336 17920361 ~ 17925146 (+)
XLOC_023973 CR762411.1 misc upstream 2371797 15217824 ~ 15218109 (+)
XLOC_024002 NA non-coding upstream 629405 16958172 ~ 16960501 (+)
XLOC_023998 NA non-coding upstream 752957 16829884 ~ 16836949 (+)
XLOC_023997 BX004976.1 non-coding upstream 817998 16771791 ~ 16771908 (+)
XLOC_024017 BX901919.1 non-coding downstream 484722 18097747 ~ 18097861 (+)
XLOC_024018 NA non-coding downstream 494367 18107392 ~ 18250076 (+)
XLOC_024019 NA non-coding downstream 696290 18309315 ~ 18314927 (+)
XLOC_024020 NA non-coding downstream 746003 18359028 ~ 18361288 (+)
XLOC_024027 NA non-coding downstream 1130996 18744021 ~ 18745029 (+)

Expression


Co-expression Network