G465141


Basic Information

Item Value
gene id G465141
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 2202371 ~ 2203051 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU528224
taagttgttcttaactgacttgactatttaaataaaaaagcctttgccagcgattacagatgtgagtctttctgggtaagtctgtaagagtGATTACAGatgtctttctgggtgagtctctaagagctttgcacacctaaatattacaatatttgcacattattatttttaattcttcaagctctgtcaagttggttgttgatcattgctaaataGCCAtttaagctgatttaagtcaactgtaactaggccactcaggaacattcaatgtcatcttggtaagcaactccagtgtagatttggccttgtgttttagtttattgACCTGCTGAATTAGTCTCTGTGTCTATTGGAAATCAGACTAAAACAGattttcctccaggattttgcctgtgcttagctctattccatttgctTGTATCCGAAATGCTGatgacaagcacacccataacgtgatgcagccatcaccatgcttgaaatATGAAGAggggtactcagtgatgtgttgtattggatttgccccaaacataacactttgtgttcaggatgtaaagttaatttct
>TU528225
tgttttagtttattgACCTGCTGAATTAGTCTCTGTGTCTATTGGAAATCAGACTAAAACAGattttcctccaggattttgcctgtgcttagctctattccatttgctTGTATCCGAAATGCTGatgacaagcacacccataacgtgatgcagccatcaccatgcttgaaatATGAAGAggggtactcagtgatgtgttgtattggatttgccccaaacataacactttgtgttcaggatgtaaagttaatttctttgccacattttttagcAGTTttcctttagtgccttattgcaaacatgatgcatgttttggaacatttgtattctgtacaggcttccttcttgtcactgtcatttaggttagtattgt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU528224 False 563 lncRNA 0.37 1 2202371 2202933
TU528225 True 373 lncRNA 0.38 1 2202679 2203051

Neighbor

gene id symbol gene type direction distance location
LOC110525063 LOC106570939 coding upstream 2477 2149240 ~ 2199894 (+)
LOC110525062 LOC106570947 coding upstream 97230 2002088 ~ 2105141 (+)
slc4a4a LOC101484802 coding upstream 1083782 775664 ~ 1118589 (+)
LOC118964805 NA coding upstream 1200083 997029 ~ 1002288 (+)
tars1 LOC106585996 coding upstream 1599852 564277 ~ 602519 (+)
zfr zfr coding downstream 155571 2342330 ~ 2451362 (+)
mtmr12 mtmr12 coding downstream 207180 2410231 ~ 2446470 (+)
LOC110525158 LOC106570936 coding downstream 263423 2466474 ~ 2489239 (+)
pdzd2 pdzd2 coding downstream 350160 2553211 ~ 2714300 (+)
LOC110516346 NA coding downstream 520714 2723765 ~ 2724931 (+)
G465261 NA non-coding upstream 3539 2197743 ~ 2198832 (+)
G465248 NA non-coding upstream 26932 2174923 ~ 2175439 (+)
G465222 NA non-coding upstream 86350 2113890 ~ 2116021 (+)
G465202 NA non-coding upstream 142118 2059971 ~ 2060253 (+)
G465145 NA non-coding upstream 240898 1959270 ~ 1961473 (+)
G465263 NA non-coding downstream 2950 2206001 ~ 2206458 (+)
G465266 NA non-coding downstream 7022 2210073 ~ 2210280 (+)
G465277 NA non-coding downstream 24165 2227216 ~ 2227430 (+)
G465285 NA non-coding downstream 31154 2234205 ~ 2234432 (+)
G465286 NA non-coding downstream 31558 2234609 ~ 2235339 (+)
G465203 NA other upstream 138304 2062328 ~ 2064067 (+)
G464705 NA other upstream 973272 1228705 ~ 1229099 (+)
LOC110525138 rufy3 other upstream 1743365 442716 ~ 549899 (+)
G463813 NA other upstream 1934220 265409 ~ 268151 (+)
LOC118964799 isca1 other upstream 2149881 43896 ~ 52580 (+)
G465355 NA other downstream 202068 2405119 ~ 2406090 (+)
LOC110525071 LOC106585963 other downstream 602332 2743964 ~ 2866482 (+)
G465578 NA other downstream 775791 2978842 ~ 2982425 (+)
G466813 NA other downstream 1569813 3772864 ~ 3773340 (+)

Expression


Co-expression Network