G465354


Basic Information

Item Value
gene id G465354
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 2401504 ~ 2403046 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU528498
GTCTAGCCTTAGTACAATGACTGTAAGTTGTTGGGAACAGCTAGCACGTTCGCTGTTCCTGTAGACTTCGTCTTTGCGCtgacgctagttagcattggctcgcagaACTGGTATCCTCCAGtgcatctgactctggggaagtagacaaAAGGGCTTCATTGACAAAATCCTGATCTATCCCTTTAAGTTCATGCGTTCGAGTGTCGAACAGTAGATGTGTTAACTTGGGACGAACACACTGGCTGCAACTCAGTAGTAAAAAGTGTCTTCTTTCCCTGACGTGAGGTGGCAAGGACAGATCCAAAATACTTCTTTTAGATTCACTCAATGAGGAGTTTAAACGTctccatcccctctgctcctcctccatcccctctgctcctcctccatcccctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU528498 True 396 lncRNA 0.48 2 2401504 2403046

Neighbor

gene id symbol gene type direction distance location
LOC110525063 LOC106570939 coding upstream 201610 2149240 ~ 2199894 (+)
LOC110525062 LOC106570947 coding upstream 296363 2002088 ~ 2105141 (+)
slc4a4a LOC101484802 coding upstream 1282915 775664 ~ 1118589 (+)
LOC118964805 NA coding upstream 1399216 997029 ~ 1002288 (+)
tars1 LOC106585996 coding upstream 1798985 564277 ~ 602519 (+)
mtmr12 mtmr12 coding downstream 7185 2410231 ~ 2446470 (+)
LOC110525158 LOC106570936 coding downstream 63428 2466474 ~ 2489239 (+)
pdzd2 pdzd2 coding downstream 150165 2553211 ~ 2714300 (+)
LOC110516346 NA coding downstream 320719 2723765 ~ 2724931 (+)
LOC110525071 LOC106585963 coding downstream 340918 2743964 ~ 2866482 (+)
G465318 NA non-coding upstream 78823 2322438 ~ 2322681 (+)
G465316 NA non-coding upstream 83775 2317355 ~ 2317729 (+)
G465315 NA non-coding upstream 84185 2316947 ~ 2317319 (+)
G465314 NA non-coding upstream 99241 2301980 ~ 2302263 (+)
G465311 NA non-coding upstream 101574 2297098 ~ 2299930 (+)
G465362 NA non-coding downstream 17792 2420838 ~ 2424505 (+)
G465358 NA non-coding downstream 45606 2448652 ~ 2760109 (+)
G465378 NA non-coding downstream 72922 2475968 ~ 2480509 (+)
G465394 NA non-coding downstream 115764 2518810 ~ 2520811 (+)
G465451 NA non-coding downstream 244215 2647261 ~ 2649273 (+)
G465203 NA other upstream 337437 2062328 ~ 2064067 (+)
G464705 NA other upstream 1172405 1228705 ~ 1229099 (+)
LOC110525138 rufy3 other upstream 1942498 442716 ~ 549899 (+)
G463813 NA other upstream 2133353 265409 ~ 268151 (+)
LOC118964799 isca1 other upstream 2349014 43896 ~ 52580 (+)
G465355 NA other downstream 2073 2405119 ~ 2406090 (+)
G465578 NA other downstream 575796 2978842 ~ 2982425 (+)
G466813 NA other downstream 1369818 3772864 ~ 3773340 (+)
G468732 NA other downstream 3705333 6108379 ~ 6156681 (+)

Expression


Co-expression Network