XLOC_024014 (borcs5)


Basic Information

Item Value
gene id XLOC_024014
gene name borcs5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 17920361 ~ 17925146 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047667
GTGTGTAAACTTggcaaatgacaaataaaaaactTGACTACATTGGGTCATCACTGAAATTAAATGAGCTAAACTACATGTCATTCAAAAGAGATAATGCATGAATGTAAATTCAACCAGATAATTcaccatatttttatttattttaattcgtCTTCGTTTACGCACTTTTTCTTCGCTTTTCCAAAGATcgctttatattttttttatcccaTTTGTAAACTAAATTCAATGATACGAGATTGAATAGAGCGTAAAACTCGTTCATGCACGAATGGTcacatgtaaacaaaacaatgacGTCATCATCACGCGTCTCATGATTTTCAAACCGGATGTTTCATTTGCAGTTCTGTACGACTGTaatcttattttactttttttcataaACGCTTACACTTGCAGGTCTATGGTAAAATGTCTCAGATTTATCTATCTTTAGCTGAAATGTAAAGCAATAGCAAGCCGCTCAATCCTGTAAACAATACACATTTAGACTGCAGCTTAACAGCTAAACACAACATCTAGGTAAGTGTTGCATGCCTGTATCGTATTTAAAGTATCTGTGTCGTAAAATATTAGGAAATGAAACTATATATGTTATCATTTGTATTAGCTGTATTACATTTGTATTATGTACATACGCATACACACATAAAAAGGATAATTATTGTTCTAAATGAATAATGTAATGTATTCATATTCATATCAGCTCTacgtttcattttgttttgaattcAGGGTTTACGTTGACTGCATAGCCGAAGTGCAACATGGGTGCTGAGCAGAGTGGAGACGCAGATCATAAACATTCAGACTTCAGTGCTTCAGTTGTACCCTCTCCAGCTAAGCATAGAGCCAAAATGGATGACATAGTAGTGGTTGCTCAAGGAACACAGTCGTTACGAAACATCCACAATGATCCTGATGTAATAAAGCTACAGGAGATTCCCACCTTTCAGCCACTACTGAAAGGTGTTCTCAGTGGACAAACCTCCCCCAGCACTGTGTGTTTAGAAAAGCTGGATTCAGCACAGGTCCTGCAACTGTGTGTAAGATATCAGGATCATCTGCACCAGTGTGCGGAGGCTGTTGCATTTGACCAGAATGCTTTGGTCAAGAGGATCAAAGAGaTGGACCTGTCAGTCGAGGCGCTGTTCAGCATCATGCAGGAAAGGCAAAAGCGGTACGCCAAATACGCCGAGCAGATCCAAAAGGTCAATGAGATGTCGATGATTCTGAGACGTATTCAGATGGGGATCGACCAGACTGTACCACTCATGGAGCGCCTCAACAACATGCTGCCCGAGAGTGAGCGGCTGGAGCCTTTCAGCATGAAACCTGATGGAGATAGCAAATAA
>TCONS_00047668
ATCACGCGTCTCATGATTTTCAAACCGGATGTTTCATTTGCAGTTCTGTACGACTGTaatcttattttactttttttcataaACGCTTACACTTGCAGGTCTATGGTAAAATGTCTCAGATTTATCTATCTTTAGCTGAAATGTAAAGCAATAGCAAGCCGCTCAATCCTGTAAACAATACACATTTAGACTGCAGCTTAACAGCTAAACACAACATCTAGGGTTTACGTTGACTGCATAGCCGAAGTGCAACATGGGTGCTGAGCAGAGTGGAGACGCAGATCATAAACATTCAGACTTCAGTGCTTCAGTTGTACCCTCTCCAGCTAAGCATAGAGCCAAAATGGATGACATAGTAGTGGTTGCTCAAGGAACACAGTCGTTACGAAACATCCACAATGATCCTGATGTAATAAAGCTACAGGAGATTCCCACCTTTCAGCCACTACTGAAAGGTGTTCTCAGTGGACAAACCTCCCCCAGCACTGTGTGTTTAGAAAAGCTGGATTCAGCACAGGTCCTGCAACTGTGTGTAAGATATCAGGATCATCTGCACCAGTGTGCGGAGGCTGTTGCATTTGACCAGAATGCTTTGGTCAAGAGGATCAAAGAGaTGGACCTGTCAGTCGAGGCGCTGTTCAGCATCATGCAGGAAAGGCAAAAGCGGTACGCCAAATACGCCGAGCAGATCCAAAAGGTCAATGAGATGTCGATGATTCTGAGACGTATTCAGATGGGGATCGACCAGACTGTACCACTCATGGAGCGCCTCAACAACATGCTGCCCGAGAGTCTCTTCTGGATGTTACCAATGGAGCACATCACTTTTGCACTGGATTGCTTATCGTATGCCTGGATCAGGTGTTTCCTGGCGTAAATGAAGTTACATGGTACAAAAGATGAAATTATATTACTGAAAAtgacaattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgcgctcTGGTACATATTTACTCAATAGGCTTAATGGAGTGCTCTTGAAGGGCATGACAACATTCAGAATGCTATTCAATGAGAAGTCATTAATGCATATGATGCTCTTGCACTTAAGGTTGTCTGCAGACTCTCTGTAATTAAAGTTGTTGGCATTACAGTTTCTGTTTTCATGAGAGATTTATTAAACACAATACTTTTTTGGCATgggatttgaaaaaaaatatattgatgaaTTTGGgggttgcacaatatatagtGTATATGTAGTGTATCTTGTGTATAGGTATAGTATGcagtgtatcatgtctgtatatgtatggagtatggagtgtatcatgtatatgtatagagtgtgcatatgtggaaaaagtgaagcgctatgaatactttccggatgcactttagtttttttttttttttcaatgatgcAGTTAATCATCCACAACCTTGACAAACCAAGCGAGCAGCATTTTAAATTTCAACaaagaccacagtttcagctaaaaataaataaataagcatttgcTGGGGCAGATTTAA

Function

symbol description
borcs5 Predicted to be involved in lysosome localization; organelle transport along microtubule; and positive regulation of anterograde synaptic vesicle transport. Predicted to be located in lysosomal membrane. Predicted to be part of BORC complex. Predicted to be active in cytoplasmic side of lysosomal membrane and synaptic vesicle membrane. Predicted to be intrinsic component of membrane. Orthologous to human BORCS5 (BLOC-1 related complex subunit 5).

GO:

id name namespace
GO:0072384 organelle transport along microtubule biological_process
GO:1903744 positive regulation of anterograde synaptic vesicle transport biological_process
GO:0032418 lysosome localization biological_process
GO:0031224 intrinsic component of membrane cellular_component
GO:0030672 synaptic vesicle membrane cellular_component
GO:0099078 BORC complex cellular_component
GO:0005764 lysosome cellular_component
GO:0098574 cytoplasmic side of lysosomal membrane cellular_component
GO:0005873 plus-end kinesin complex cellular_component
GO:0016020 membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-041010-83 Predicted to be involved in lysosome localization; organelle transport along microtubule; and positive regulation of anterograde synaptic vesicle transport. Predicted to be located in lysosomal membrane. Predicted to be part of BORC complex. Predicted to be active in cytoplasmic side of lysosomal membrane and synaptic vesicle membrane. Predicted to be intrinsic component of membrane. Orthologous to human BORCS5 (BLOC-1 related complex subunit 5).

Ensembl:

ensembl_id ENSDARG00000077830

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047667 False 1361 mRNA 0.39 4 17920361 17924342
TCONS_00047668 True 1542 mRNA 0.41 6 17920668 17925146

Neighbor

gene id symbol gene type direction distance location
XLOC_024013 btbd10a coding upstream 27531 17862338 ~ 17892830 (+)
XLOC_024012 pth1a coding upstream 58665 17860798 ~ 17861696 (+)
XLOC_024011 PYURF coding upstream 70787 17847054 ~ 17849574 (+)
XLOC_024010 galnt18a coding upstream 94847 17689565 ~ 17825514 (+)
XLOC_024009 vac14 coding upstream 307336 17589906 ~ 17613025 (+)
XLOC_024015 C25H12orf29 coding downstream 278 17925424 ~ 17934675 (+)
XLOC_024016 tmtc3 coding downstream 77222 18002368 ~ 18055064 (+)
XLOC_024017 BX901919.1 coding downstream 172601 18097747 ~ 18097861 (+)
XLOC_024018 NA coding downstream 182246 18107392 ~ 18250076 (+)
XLOC_024019 NA coding downstream 384169 18309315 ~ 18314927 (+)
XLOC_023973 CR762411.1 misc upstream 2702252 15217824 ~ 15218109 (+)
XLOC_024008 NA non-coding upstream 384445 17528781 ~ 17535916 (+)
XLOC_024007 NA non-coding upstream 409942 17502996 ~ 17510419 (+)
XLOC_024002 NA non-coding upstream 959860 16958172 ~ 16960501 (+)
XLOC_023998 NA non-coding upstream 1083412 16829884 ~ 16836949 (+)
XLOC_023997 BX004976.1 non-coding upstream 1148453 16771791 ~ 16771908 (+)
XLOC_024020 NA non-coding downstream 433882 18359028 ~ 18361288 (+)
XLOC_024027 NA non-coding downstream 818875 18744021 ~ 18745029 (+)

Expression


Co-expression Network