G465539


Basic Information

Item Value
gene id G465539
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 2842347 ~ 2984390 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU528736
gttgagaacacctttatttaaccaggtaggctagttgagaacaagttctcatttgcgacctggccaagataaagcaaagcagttcgacacatacaacgacacagagttacacatggagtaaaacaaacatacagtcaataatacagtataaacaagtctatatacgatgtgagcaaatgaggtgagataagggaggtaaaggcaaaaaggccatggtggcaaagtaaatacaatatagcaagtaaaacactggaatggtagatttgcagtggaagaatgtgcaaagtagaaataaaaataatggggtgcaaaggagcaaaataaataaataaattaaatacagtagggaaagaggtagttgtttgggctaaattataggt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU528736 True 380 lncRNA 0.36 3 2842347 2984390

Neighbor

gene id symbol gene type direction distance location
LOC110516346 NA coding upstream 117416 2723765 ~ 2724931 (+)
pdzd2 pdzd2 coding upstream 128047 2553211 ~ 2714300 (+)
LOC110525158 LOC106570936 coding upstream 353108 2466474 ~ 2489239 (+)
mtmr12 mtmr12 coding upstream 395877 2410231 ~ 2446470 (+)
zfr zfr coding upstream 433086 2342330 ~ 2451362 (+)
isl1 isl1 coding downstream 100291 3084681 ~ 3092690 (+)
fst fst coding downstream 479279 3463669 ~ 3491741 (+)
LOC118964791 NA coding downstream 555976 3540366 ~ 3542885 (+)
hspb3 hspb3 coding downstream 833648 3818038 ~ 3823330 (+)
LOC110513046 snx18 coding downstream 842780 3827170 ~ 3866575 (+)
G465535 NA non-coding upstream 14337 2825517 ~ 2828010 (+)
G465527 NA non-coding upstream 33188 2807560 ~ 2809159 (+)
G465526 NA non-coding upstream 36084 2805898 ~ 2806263 (+)
G465499 NA non-coding upstream 90812 2751191 ~ 2751535 (+)
G466212 NA non-coding downstream 4687 2989077 ~ 2989881 (+)
G466239 NA non-coding downstream 27681 3012071 ~ 3012366 (+)
G466258 NA non-coding downstream 62505 3046895 ~ 3047113 (+)
G466259 NA non-coding downstream 62902 3047292 ~ 3047939 (+)
G466302 NA non-coding downstream 132510 3116900 ~ 3117150 (+)
LOC110525071 LOC106585963 other upstream 8237 2743964 ~ 2866482 (+)
G465355 NA other upstream 436257 2405119 ~ 2406090 (+)
G465203 NA other upstream 778280 2062328 ~ 2064067 (+)
G464705 NA other upstream 1613248 1228705 ~ 1229099 (+)
G466813 NA other downstream 788474 3772864 ~ 3773340 (+)
G468732 NA other downstream 3123989 6108379 ~ 6156681 (+)
G468643 LOC106607869 other downstream 3210382 6194772 ~ 6199155 (+)
G468755 NA other downstream 3225809 6210199 ~ 6244501 (+)
G468768 NA other downstream 3270086 6254476 ~ 6371873 (+)

Expression


Co-expression Network