XLOC_024016 (tmtc3)


Basic Information

Item Value
gene id XLOC_024016
gene name tmtc3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 18002368 ~ 18055064 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047670
CTCCTCACAATTTGTGTGCCTCAAACGTGTCAGCTTACCATTAAAATCAAATCACAGATCTTCTCATCCTCATCCCCCAGATCCTCTGGATCCATTCCCATGAGGAGCCGCCAGTCTGCGGCCGCAGGCATTCTTCAGGTCAGCTGCAAATGTCCCCCAGAGCTGAACTGAACAACTGATGCTGAGATTGCCAGTCTTTTTCTACCTACAGACAACATGCAAAACGAATGTAGTTTATTTCTTCACACGGACTTCTCATTGAAAACAACACCATATACCGTCACAGCACAAAAGAGTCAtagcagaataataaataaacGACAAAACGCCATGCTAAATATATTAGCCAGACATATAACGTTAGTTAGTTCTCACAATGTCGATAATTAGAAATGCATGCAATTGCTCGTATTTGGGTTGGTTTTGTTCTTTAGCATAAACCTAAATTTGAACACGTCTTAATGTCAACTTTTACACATATTTGTGAAACTAAAGACACTGAAAATAACGTTTTCAGACCTTATTAAGCCATCTTGGGTTCCTCTTGCGCTGCCGCTGCTGCTAGGCAACAAGGAAAACAGTCGTAAAACGTAACGTCGTAAAATCGTCTCTGTTTggattctttttaaaaaaatatttcctttataCGCGGTCCATTCATTATAAGGGAATCACAACTAAAACCATATATCTATCTGTGTCTATACGTTATTTGAAATGGCATTACAGAAACACAAAATCCGCGAACGGCTACTCTGTAATTCCCTACTTTTGTTGTGCCAGGCATTTTGACCCGGAAGCAGTTGTTGGACTCTGTTAATTCAATGCCGTGGATCGAACTTGCTGCTTTAgtcaacataaacaaacatattCTCTTTTCATTTAGCTTTTCCCCAGACATGACAAGTGCTCAATGAGGTCTCACGTCAGCGATGGCTGTAGTGTCGTGGAAGGAGATCTGTCTTCTGACTGGACTGGTGGTGGGCTGCTACTGGAACAGCCTGTTTTGTGGTTTTGTGTTCGATGATGTCTCTGCAATCTTGGATAACAAAGACCTTCGTCCCACCACACCGTTAAAGAACCTCTTCCTCAATGACTTCTGGGGCACTCCGATGTCAGAGGAGCGGAGCCATAAGTCCTACCGACCGCTTACTGTTCTGACCTTCCGCCTCAATTACCTGTTCAGCGAGTTGAACTCCTCGTCGTACCACCTCCTCAATGTGGTTCTCCATGCTGTGGTGTGTGTCCTCTTTCTCCATTTCTGCCGTCTGCTCCTTGACAGAAGCACCAGCCTTATCGCGACCTTGCTGTTTGCAGTCCACCCCATCCACACAGAAGCTGTTACAGGTGTTGTTGGCAGGGCTGAGCTGCTATCCTCCATTTTTCTGCTGGCTGCTTTCCTTGCGTACACCAAATCAAAAGGCACCGATCACTCTATCGTTTGGACTCCTATCATTTCAACCGTGTTCCTGGTTGCTGTTGCCACGCTATGCAAGGAGCAGGGAATTACTGTCATCGGGATCTGCTGTATTTACGAGGTGTTTGTTGCCCAAGGGTTCACTCTGCCCATGCTGATTGACACCCTGCTACAGGTGTTGAGAGGGAAAGATGGGTTTCCCTATGCTGTCCTCCAGACCCTGCTGAAGCTCATTGTCCTGATCATCAGTACACTTTTGCTGGTCATTATTAGGGTTCAGGTCATTCAGTCCCAGCTGCCAGTGTTCACCAGGTTTGATAATCCAGCTGCCGTCAGTTCCACCCCGTCCAGGCAGCTGACCTTTAACTACCTCCTGCCTGTAAATGCCTGGCTCCTGCTCAACCCCTCAGAGCTTTGTTGTGATTGGACGATGGGCACCATCCCTCTCGTGGAGTCCCTGCTGGACTCACGCAACCTTGCCACATTGGTGTTTTACACCTTTTTAGGCCTTCTGGCCTATCACGGTCTTTGGTACAACCACAGCTCCTCAAAGATCATCATGATGGCACTGTCTCTGATTGTCCTTCCGTTCATCCCTGCATCCAACCTATTTTTCCCTGTGGGCTTCGTTGTTGCTGAAAGGGTCCTATATGTACCCAGCATGGGATTTTGTGTGTTGGTGGCCTACGGATTCAAACTTCTATCCCAAAAAGGGGGCCTAAAGAAAATGTCCTGGTTGCTCATGGGAATTCTTCTAACAACGCATGCTGTAAAAACTTTCAACAGAAACTGGGACTGGGAGTCCGAATACACGCTTTTTACATCTGCACTGAAAGTGAACAGGAACAATGCCAAACTGTGGAACAATGTCGGACATGCTTTGGAGAATCAAAACAGCTATGAGAGAGCTTTGAGATACTTTCTTCAGGCCACAAGAGTGCAACCAGATGACATTGGGGCCCACATGAACGTTGGGAGAACCTACAAGAACCTAAACAGGTCCAGAGAGGCAGAGGAGGCATATCTAATTGCGAAATCCCTAATGCCACAGATCATTCCAGGGAAGAAGTATGCAACTCGTGTGGCCCCCAACCATCTGAACGTTTACATCAACCTGGCTAACCTAATTCGAGCAAATGACTCGCGCCTAGAGGAAGCAGACCAACTCTATCGACAGGCCATCAGTATGAGACCAGACTTCAAACAAGCCTACATCAGCCGAGGGGAGCTTCTGCTGAAAATGAACAAGCCCAGTGAGGCAAAGGATGCCTACCTACGAGCACTGGAGCTGGACCATACCAATGCAGACCTCTGGTACAATCTGGCTATAGTCAATATTGAGATGAAGGACCCCTCAGAGGCTCTGAGAAACTTTAATCGCGCACTGGACCTGAATCCACGGCACAAGCTGGCTCTCTTCAACTCAGCGCTTCTCATGCAAGAGTCAGGTGAAGCTAAACTTCGGCCAGAGGCAAATCGTCGCTTTCTAACCTACGTAAAAGAGGAGCCAGATGATGCTAATGGCTACTTCAACCTGGGTATGTTAGCGATGGATGCCAACGAGAACGAAGAGGCCGAGCACTGGATGCGTGAGGCCATTCATCTGCAACCTGGCTTCCGCAGCGCTTTATTTAACTTGGCCCTGCTCTACTCTCAATCACAGCGTGAGCTGGATGCTCTCCCGGTGCTTGAGGAGCTCCTGCGGTACCACCCAGAGCATGTCAAGGGCCTGATCCTCAAGGGAGATATCCTTATGAACCACCGCAAAGATACACGTGGTGCCAAGACCTGTTTTGAACGCATCTTGAGCATGGACCCAAGCAACGTGCAAGCCAAGCACAACCTATGTGTGGTGTACTTTGAAGAACGGGAGCTCCAGCGTGCAGAACGTTGTCTGGTAGACACACTGGCAATGGCGCCGCAGGAGGAGTACATTCGACGACACCTTGCCATCGTAcgcaacaaaatggccgccatgAGTGCCGCAGGGCAGCCGATTGCACCGACAGAGGGTGGTAGTATGTCAGATAAGCAGCAAGGGCATCAACCAGAAGAcaaaaaggaggaggaggaagaagaggaaggGCGAGGAGTTGCCTCGGGAGCAGGGGAGGGGGCCAGGAAAGAGAAGAATTTGAGGAAATCCTCCTCCACTGAAAACCAGGGCCACGGCCAGTCAGAGAAGCTGGACACAGGCCAGCCTGACAAGCGGACTAAGAGCAAATCCACAAAAGAGATTAAAGATATAGAAAAGAAAAGGGCGGCTGCCTTGAAGAGACTGGAGGAGATTGAACGCATATTAAGCAGCGATTAACCTTGTTTATCAACCACCACACTATTTTTATATAGAACTATTTAAAGCGCAAGAACAATacgttttgtttgggtttttcaATTTGTTTAAGCATGTTTGGTGGCGCTtgatttttttgtgtctttttatatatataagtaGTGAGTTATACCTCCTTTTCCCACAGCTTTAATTATGTAAAGCTGTTCGACTGAAAGGGAAAATCAGGTGTTGCGCTGAAGAAGCACAAAATTTggtacagtatgttttttttttcccctttaaaagaAATCTTATTTTACCATATCGTTTATTTATGATTGCCTATATTTGAGTCACTGGATTAGATAGTCACAATTATGTATCGATTTACTACACCACTGCAAGTATTTTTCATAATTACACATAATACATTAGTATATCATCCAGCCCGTTTTATAGCAGGTCCGTCACATGAATGTTGAGTGTTAGTCCCATGCCCCTCCCCCTTTTTAAGTGACATCACCACATTTCCGTCGATTATTTGCTGCTGCGTTTGTTTATGTGTTAtaattgctgttttgtttttactctaCATGGCAAATGGTGTCAGTGTTAATTATATCCTCTGACATAATCTCATTCTGAATTAGGGTCACCTCCCTTCTCCAGCAGTGTTATTGCAGGCTTCTGGGCTTTTTACAATATGGCTCGCATACTGTTGCTGatttctcagattggtcatgcAAAGCTTTTTCTGGTTTATTTCCCTTCTTTCTAAGGATTTCTACTGCTTTTTGCTCTGTTTCTTGTTCTCCCTACAAAGATCAAAGTGACATTATAATCAGCCGTTGAGCGGAAAAAAGCTTTGAAACCTAGTAGGCATAATTCACCCAAACTAAACTTCTGTTGTCATTTACTTAGCGTAATGTCATTAGAACGCTTCCTTTCCTCCGTGGAACATTATACCACCCTCATGTTATAAATATGACGTATGAGCTATGCAATAGTTTGGCTTCGCTAACACAAGTCATTATTCAATGCAAATCCTGACTTGCTGCTTGTTCATAAAAGAGCGTTTGATGTCTGATTCAGAAACGACTCGCTATTTAGGAGTTGTTCATGTGACTTTAAACGTCTCCAGATATGGTGTGAATGTAGCCACAGGAAACCTGAAActctaatgttatttttttaaaaagcttcaTTCTTCGTCCTTTGCCATTGTATTTGCTTGAACGAACAGGACGTTTTCTGAAAGTTTCTTCTATTTTCTAGCACATAAGTAATTCATATGGGTTTGGACCGGCAtaggggtgagtaaatgatgacagaattgtaattttttggGGTAAATGTCCCTTGAATATGACGAAAATCACAATGTAGCCCAAGATTTTTGTGGGTTCTCTTAGCTTTTGTATTTGGAAAGAATCAATCACTTTATTTCTTTCAAAGGGAGATTAGATGCCAATATGTTACTTCAGAATTTTAATGTACAGCAGATGATGCAGTTGGGTATAGTGTTTCCTGGGAAGCTGAAAAAACCATGTGCTCTTGCTGGAATcctgtcatcattttactgtttacTTTGAAGGCCGACCCTGAAATATCTTCTTCTATCTCCTTTGACCTTTTTGAAGAtcttcatgaaaaaaaaatggtacCTGAGAGCTGGCCAATCTGTCATGCAAAGCCTGTGCGGAAGTTGTACATTTACACAAGAGGTACTAAGACTAATGCGGGCCACATATGAAAATTGAGGTGTTATTTAAGTGTAAGAAAGCCACTTAAATTAGCGTGACATTCTTGTGATTAAGTACAAGACTCATGCTTTTCAGTGTCATCGGCTCTTTTGCCAATTGAGATGTCTTCATAAAACTTGAGTGAGAAATCTGAA
>TCONS_00047671
GGTTTCCCTATGCTGTCCTCCAGACCCTGCTGAAGCTCATTGTCCTGATCATCAGTACACTTTTGCTGGTCATTATTAGGGTTCAGGTCATTCAGTCCCAGCTGCCAGTGTTCACCAGGTTTGATAATCCAGCTGCCGTCAGTTCCACCCCGTCCAGGCAGCTGACCTTTAACTACCTCCTGCCTGTAAATGCCTGGCTCCTGCTCAACCCCTCAGAGCTTTGTTGTGATTGGACGATGGGCACCATCCCTCTCGTGGAGTCCCTGCTGGACTCACGCAACCTTGCCACATTGGTGTTTTACACCTTTTTAGGCCTTCTGGCCTATCACGGTCTTTGGTACAACCACAGCTCCTCAAAGATCATCATGATGGCACTGTCTCTGATTGTCCTTCCGTTCATCCCTGCATCCAACCTATTTTTCCCTGTGGGCTTCGTTGTTGCTGAAAGGGTCCTATATGTACCCAGCATGGGATTTTGTGTGTTGGTGGCCTACGGATTCAAACTTCTATCCCAAAAAGGGTGAACAGGAACAATGCCAAACTGTGGAACAATGTCGGACATGCTTTGGAGAATCAAAACAGCTATGAGAGAGCTTTGAGATACTTTCTTCAGGCCACAAGAGTGCAACC

Function

symbol description
tmtc3 Predicted to enable dolichyl-phosphate-mannose-protein mannosyltransferase activity. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in lissencephaly 8. Orthologous to human TMTC3 (transmembrane O-mannosyltransferase targeting cadherins 3).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-061221-2 Predicted to enable dolichyl-phosphate-mannose-protein mannosyltransferase activity. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in lissencephaly 8. Orthologous to human TMTC3 (transmembrane O-mannosyltransferase targeting cadherins 3).

Ensembl:

ensembl_id ENSDARG00000062846

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047670 False 5589 mRNA 0.44 14 18002368 18055064
TCONS_00047671 True 630 mRNA 0.50 4 18025414 18039501

Neighbor

gene id symbol gene type direction distance location
XLOC_024015 C25H12orf29 coding upstream 67693 17925424 ~ 17934675 (+)
XLOC_024014 borcs5 coding upstream 77222 17920361 ~ 17925146 (+)
XLOC_024013 btbd10a coding upstream 109538 17862338 ~ 17892830 (+)
XLOC_024012 pth1a coding upstream 140672 17860798 ~ 17861696 (+)
XLOC_024011 PYURF coding upstream 152794 17847054 ~ 17849574 (+)
XLOC_024017 BX901919.1 coding downstream 42683 18097747 ~ 18097861 (+)
XLOC_024018 NA coding downstream 52328 18107392 ~ 18250076 (+)
XLOC_024019 NA coding downstream 254251 18309315 ~ 18314927 (+)
XLOC_024020 NA coding downstream 303964 18359028 ~ 18361288 (+)
XLOC_024021 cep41 coding downstream 381237 18436301 ~ 18445279 (+)
XLOC_023973 CR762411.1 misc upstream 2784259 15217824 ~ 15218109 (+)
XLOC_024008 NA non-coding upstream 466452 17528781 ~ 17535916 (+)
XLOC_024007 NA non-coding upstream 491949 17502996 ~ 17510419 (+)
XLOC_024002 NA non-coding upstream 1041867 16958172 ~ 16960501 (+)
XLOC_023998 NA non-coding upstream 1165419 16829884 ~ 16836949 (+)
XLOC_023997 BX004976.1 non-coding upstream 1230460 16771791 ~ 16771908 (+)
XLOC_024027 NA non-coding downstream 688957 18744021 ~ 18745029 (+)

Expression


Co-expression Network