XLOC_024019


Basic Information

Item Value
gene id XLOC_024019
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 18309315 ~ 18314927 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049218
AGCGCTGATACGCTAGTAAATACCAGCACACAGGCATCTGACACGTTGGGAAGTTGGAAAGTGGGAGATATGAACAGAAATACAACTGCTAGCCTCAGTGTTCTGGCATGTGGAGAGGAGGAGGATTGTGCAGTGTTGGGTTTCACAATGGCAGGCGTcctgaaaaagaggaaaaagcGGCGGTTGTTCTCAGCAGTTAGCTTCCTGTTGCGGCTCCGGGTCTCGATGTGTGTTTGCTTGACTTTGTTTATGAGGATGTTTCTATGACACTAGGATctcTGGGTTTGCTTAGCAACTGCGCCGCAAAGTGAAGCACTGCAGCGGTGAGTCAACCTGCTGTCGTACTGACGAGAGATGAAGGACAGATGATAGAACTAGAGATGCTGTCAGACTGCGTGAGCAAGCCGCGTGGGCTCAAACACAGAGACAGCGGCGGATGATTCACACCGGCTCGAGTGCTCCTTTTGTGAGCCGCGGCTGCCGCATCTCTGCTGTAACACGGCCTTCATAGAAATGAAGCCACGAAGGGCCTTGAAATGGATGGAAGCAACACAAACCGAGAGCTGTGAGCTCTGGGCTGACATTGACAGAGGGAGTCTATTCATAGCCGATGGAGAAATTCAAGctttaaaatgtcttcatttcaTACGTGCCTGTAGCTGGTCGTGCGTAGCGTTTTTCGGCAATAAAACGTACAAACTTGA
>TCONS_00049219
GTTGGGAAGTTGGAAAGTGGGAGATATGAACAGAAATACAACTGCTAGCCTCAGTGTTCTGGCATGTGGAGAGGAGGAGGATTGTGCAGTGTTGGGTTTCACAATGGCAGGCGTcctgaaaaagaggaaaaagcGGCGGTTGTTCTCAGCAGTTAGCTTCCTGTTGCGGCTCCGGGTCTCGATGTGTGTTTGCTTGACTTTGTTTATGAGGATGTTTCTATGACACTAGGATGTGAGTGAGTCATTTATGGCCAGTGTGAGGTTTCATTCTTActcttcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgccaaACTAGATTAGTCATTCATCTCGGATTGCATATTTTTATGCCTGGGGATGACACTTTAAAATATGGCTTTGTACATCAGGTGCAATAAGAGTTGTGGTGTAGATAAAGCATTGCAGAAGTGCCTTAAATTATATGGAATTAtatctgtttttgtgtttgttgagTCTCCATTAAAGGGAGAAAAGACGAGGCTAAAAGGGACATATTGATTGTAAtgggtttcctgttcttagctttcACCCTGGTGTCAAACCTCAGAGAGAACACGATGTTCTGAaagactgtctgtgtgtgtgcgtgcgtgcaagtgtgtatatttatatgaaacgAGAACGCATATCTGAGCTGAGACAAATTGCATCACAAAAAATGTGTGtgggagtgtgtatgtgtatatgcacAGTTTTACTTGATGAATTTGTTTGTGccaaaaataattagaatattaagaataatcatgttccatgaatcatatattatattatattatattatattatattatattatattatattatattatattatattatattatattatattattatattatattatattatattatattatattatattatattatgttgttgttgttattatcatccttattatcatcattatcatcatcattattattattattattattattattattattatatgaggattactttatgtaattaataaaaattatattaatattaaatattatgccTTTATAAAAGTTTAATGACTTCATgaatataaaataagtaaatacatttataaatatagcaaaggtaaatgataacaatatatacattctgaaaaaaatgtaattattaggAAAACATTTTCTATTTGCAATATGCAAATAAGAATTTaatgacaaaaatgtcaaaatattgtagagcaaaaataaaaagcaaaagaaaattacagtttttcctaaatataaattcataaattacacattaatatttatgttaaatatgATATGAGTGTTTATGAGAGGCCATGCATGTGCTTAAATCAAACCATAAATCATAAACATCTGCACTCTACCTCTGTCAGTATAACAACACATTAGCAGAAACACTGAGCTCTGCCTGTCCTGTGCTCTGACCGTCTGCTCATTCAAACAGTGAGCAGCCCATTCAGAAGCCCAGCAGACACTCATTCATGCTCACTACAAGCCCTGCcttccctctctctttctttatttatttagctcTGGGTTTGCTTAGCAACTGCGCCGCAAAGTGAAGCACTGCAGCGGTGAGTCAACCTGCTGTCGTACTGACGAGAGATGAAGGACAGATGATAGAACTAGAGATGCTGTCAGACTGCGTGAGGTGAGAAACTGGACGGATTCAGCTGCTCAGATCATTATACTGTTAAATTAAGATCATACAGGTTGCATGCACACCATgatttgtcaggtttttttttttttttttttggatcaaccaaggataaaaaataataatatggtaAAAAATACTGTGAATGCTCCTACCCTGATATTTTTACAGGCCATGAAAATGTGCAACTttgtattaattcatttttaaaaatgtcaataattatattatattatattatattatattatattatattatattatattatattatattatattatattatattatattatattatattatattatattatattatattattactgatCTATGAAGGTCtgcataataataattacacaactaaattgattataataaatacaataagagtagtgtattatttaatataacagtagaaaaaatgtaaatattattacatatttcaaatctaataacatttatttaggtTTTGCTTCATTAATAGCACATAGAAATGTCTATTTTAAAACTGTAGTCTTTCATTATTACCTGTTTTATAAGCCATTGTCATTAATTGAGTAATTGTTTGGCATGTGTTGCACACTGCAAATACAAGTCAAACTCAGAGCGAGaactgcacattacattacacatttaTGTAATCTGTGATTTAACAAATGCAATCCAATCCTCATACTCACAAAAACCTATTTTTACTCACATTTGTTGTGTGCAAGTGTTCATTATGGCCCTGATTACTAGTCATTTACAGTCACCTGAAATGCTCTGGCAGTGAATTGTTCTGCAGTTTGACAGTCTCCCACCTCTGCTTTAGCCCAGTCGTCTCCCTCTCTCCGCTGTTCTTGTTTCTGAAGCACGAGACATATTAATCATTTCCTGCAGTCTTCACTGGCttcctgtgtctgtgtgtgtgttgagtgggAGAAGAGCTCAAATGACTAGAGCTGAAAAACAACAAGAAAGACAAAGACACCATATAATTCTGCATGACAGTCTGGAGGTGTGCAAGAGTGTCAGGAATTAACTTTTAGTGATTAAAGGTGGAATAAGAGATCTTAAATGCTAATGTTAGCCTGATAGCTCTAAAAGCCTACATCCCACACTGCAAACCGCCAATTAAAGCCACGTCTCCTGAACAAATAAACACGCACTAACCAACATTACTACAATACATCACATAACAATTACCAGACCAcagagaaaactttatagtacagTTAATAATTACAATAGCAAACTGTAAATAAGAAGGTGGGTTGTTGATATTTGCCTGCCATTCTCAGTCTGAATCGCACCCATGCACATGCGGATGACATAATCCTTTCTGTATGAACAGGGTGGGCACATTTTCACAGGCAGAAAGGGTAGCCTGTCATAATGCTCAGACTGAACGTTTTGACTAGACAAACTTTTCTTGGTCCTACAGcttagaacatttaaaaaaaaaacttaaaaaaaaatgttttaactatgtttacatgaacatcagtaaccaaattatttgccttaatcttaataagacaataatatgactATGGTGTTTAcatgaatgtttctttcatgatccattagattaacgtcattgcgtcacaaCACAATCCAAATTTCCCCCAGAGTTTCGTGTAATTTCAGGGGTTTTACtgtaatttgtcgactttaactgcagtttgccactttcactttcattcagcaacatttcatgcatgccccatgacaaacaagatCTTGactgcgagtatgaactgctggaagagtgctgttttagtggaatttgataccgcacaaaAATCTCACATTTTGTAATGCAGTTGTCTGCAATCCTtcactcggtaggtgcagagaatactGTCAAAGAACCTGTAGACTATCCTGACACAAAATGAGGCAAAAGTACATGACAGTAATAGCTTGATTGCAGTGTTttcatgtctgtactgcacttcaataatgtgatcaaaatcagcatactccacgtcttaatttgatttctgtttagttcgattaagaccttaattggattaaattactcaaattactgtttatatggtagactcttaatcagagtattgtcttaatcgttttaaaattattattggcGTCCATGTAAACATACCAATTGACAGCTGTTTGCAAAGCTTATCCGTAAACTACGGCCATTTGTAGTAAATGTTCCTAACGTTAAACCAGAAAGTATGTGCAATTGCGACCATCACGAGTCCTCTTACACAAAATAAAGCAAGCAACATATTTCATAACAGCGTTCTAAGCAAGTAACAAATGAGTTGCATCATTACGTCTTACTATCAaggaaagaaattaataaaaactacgtGTTTATTAATACAATTGAATCAAATCAAAGTTCTGTTCTGTTTATCCAACATACACTATAAGGGTTTACCATAGACTGGTATGCTTTCTTCAGGGCGTATTTGGTTGTTCTATGCGACTCGTGAGAGCACCTCTGGCCGGAGGAGGTTTACTGCTGATCACATCACCATACTTTACTCACATGATTTCAAAGACATTTGCAGCACTTTTCAAATCACAAATATAATTTTATGTAGATAGTTCAGCCCTAATTTTTACTATTGTCCCTATTACCAATATTGGTTTTTAATGGATTTTCTATGCTCACAATGACAATTTATgaaaattttattataaaacaatacaataaatttACAATGTGATACAATTAAAAACATATCATTTTAActataaaacatttagaaatgtattttttattgcaatttaatAGACAAATttgatatattaattatatagtgtgcaagtgtgtgattatattaaaataaatgtgcagtacataaaatatgaataattattttataaattgtgtatagatagatagatagatagatagatagatagatagatagataggtagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatatatagatagatagagttggttttatatttgcacatttgttcattaaacagtttctatattgtttaccagGTAACTTTGAacattcgatcggaattagcacgCTAGTATGatttctaaacaacattaacactatctaattcaaTGTGAACAAAGTTGTACTGtaatagtcatttgctgctaatatgatgtCCCTAATAAATTAAGctaatattttttgcttttaataaaaaTAGCCTAATAAAACCACTTCACTTCGAGCCGAATACTAAAGCATTCTACAGCAAATATTATATAACCGACATCACAAGCTTTTTGCCACATTGAATGTTATTTTCATCACTGAACCTCGGTGTGTCTGTAACAGTTGTGGTGACTAATATTTGGGTGTAATACCTGGTTTGCTGAAGGTAGTGTGGGTTGAAGCACAGTGTTTTTCGCCCAGTCTCTGTCGTTCTCTCCCCCTCGCGCGGGTTATTTTTGAAAGTGCTTTAAAATGATAATGACTATTTTTACTCGTTTTCCAGCAAGCCGCGTGGGCTCAAACACAGAGACAGCGGCGGATGATTCACACCGGCTCGAGTGCTCCTTTTGTGAGCCGCGGCTGCCGCATCTCTGCTGTAACACGGCCTTCATAGAAATGAAGCCACGAAGGGCCTTGAAATGGATGGAAGCAACACAAACCGAGAGCTGTGAGCTCTGGGCTGACATTGACAGAGGGAGTCTATTCATAGCCGATGGAGAAATTCAAGctttaaaatgtcttcatttcaTACGTGCCTGTAGCTGGTCGTGCGTAGCGTTTTTCGGCAATAAAACGTACAAACTTGA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0072359 circulatory system development biological_process
GO:0043009 chordate embryonic development biological_process
GO:0030154 cell differentiation biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0001944 vasculature development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049218 False 704 lncRNA 0.50 3 18309315 18314927
TCONS_00049219 True 5569 lncRNA 0.34 1 18309359 18314927

Neighbor

gene id symbol gene type direction distance location
XLOC_024018 NA coding upstream 59239 18107392 ~ 18250076 (+)
XLOC_024017 BX901919.1 coding upstream 211454 18097747 ~ 18097861 (+)
XLOC_024016 tmtc3 coding upstream 254251 18002368 ~ 18055064 (+)
XLOC_024015 C25H12orf29 coding upstream 374640 17925424 ~ 17934675 (+)
XLOC_024014 borcs5 coding upstream 384169 17920361 ~ 17925146 (+)
XLOC_024020 NA coding downstream 44101 18359028 ~ 18361288 (+)
XLOC_024021 cep41 coding downstream 121374 18436301 ~ 18445279 (+)
XLOC_024022 tes coding downstream 160105 18475032 ~ 18496410 (+)
XLOC_024023 cav2 coding downstream 241661 18556588 ~ 18561795 (+)
XLOC_024024 cav1 coding downstream 248549 18563476 ~ 18577586 (+)
XLOC_023973 CR762411.1 misc upstream 3091206 15217824 ~ 15218109 (+)
XLOC_024008 NA non-coding upstream 773399 17528781 ~ 17535916 (+)
XLOC_024007 NA non-coding upstream 798896 17502996 ~ 17510419 (+)
XLOC_024002 NA non-coding upstream 1348814 16958172 ~ 16960501 (+)
XLOC_024027 NA non-coding downstream 429094 18744021 ~ 18745029 (+)
XLOC_024029 CR391963.2 non-coding downstream 569751 18884678 ~ 18885569 (+)
XLOC_024031 NA non-coding downstream 605616 18920543 ~ 18924391 (+)
XLOC_024040 NA non-coding downstream 1041417 19356344 ~ 19362087 (+)

Expression


Co-expression Network