XLOC_024020


Basic Information

Item Value
gene id XLOC_024020
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 18359028 ~ 18361288 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049220
ACAAGAGCCCCGAAACACAAGAGATTATCCAACCCGTCTCCACCTGCCAGCTCTCAGTCAGCAGGCATCAGGACAACAGCCTCTAAGACTCGCTTAAGGAAAAGCCAACAGGATTGAGATGTGAAGATGTAGGCTGGATGCTCCAGTGGCACATGACTGGACAGGCACATGGacactagacacacacacacacacacacacacacacaccaacacacacacacctttacaaAGAAGATGGAGACTAGACTTAAGTTTTTTACTCCAGTGAACAGATAAGTATGATGTCAGTAGATGTATAGagagaatattattaataatatttcagtcTTTGTACTTGAAATTTCACACTAATTTATTATTACTTCATATTTCTTTGTAATTGTGAAATACCAAGTAatgagtttgtttttttacagagtaTATAAACCAGCTACACAGTTTCATAATATGCAACTATTTGCAACAATAAGGAAGTTCAGTTCCTCTCCTAGTTTCTCCATTATAAAGTAAATACAAATTTGACAAGGTCAGATTTGTCAAACAGGTTGTGGAATAAGACAGGACGGATGTCCAAGTTTTTGCAATGACCCCGAGCAGCACCTCTTTCCAGTTAAAGCACTGATCCCACATGTGGATCCGTACATCCTTATCAGCAGCCGGGACAGCCTGTTCCCACATTTCCTCCTGCAGCTGAATGGACACGaccaagaaaaaaacaaaaacagagctCTACGAAAATCGGAAGCTCATGAGACTTTACTGGAACTGTAAGCATAACAAAGAGCATGCAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049220 True 793 lncRNA 0.41 2 18359028 18361288

Neighbor

gene id symbol gene type direction distance location
XLOC_024019 NA coding upstream 44101 18309315 ~ 18314927 (+)
XLOC_024018 NA coding upstream 108952 18107392 ~ 18250076 (+)
XLOC_024017 BX901919.1 coding upstream 261167 18097747 ~ 18097861 (+)
XLOC_024016 tmtc3 coding upstream 303964 18002368 ~ 18055064 (+)
XLOC_024015 C25H12orf29 coding upstream 424353 17925424 ~ 17934675 (+)
XLOC_024021 cep41 coding downstream 75013 18436301 ~ 18445279 (+)
XLOC_024022 tes coding downstream 113744 18475032 ~ 18496410 (+)
XLOC_024023 cav2 coding downstream 195300 18556588 ~ 18561795 (+)
XLOC_024024 cav1 coding downstream 202188 18563476 ~ 18577586 (+)
XLOC_024025 met coding downstream 222589 18583877 ~ 18679071 (+)
XLOC_023973 CR762411.1 misc upstream 3140919 15217824 ~ 15218109 (+)
XLOC_024008 NA non-coding upstream 823112 17528781 ~ 17535916 (+)
XLOC_024007 NA non-coding upstream 848609 17502996 ~ 17510419 (+)
XLOC_024027 NA non-coding downstream 382733 18744021 ~ 18745029 (+)
XLOC_024029 CR391963.2 non-coding downstream 523390 18884678 ~ 18885569 (+)
XLOC_024031 NA non-coding downstream 559255 18920543 ~ 18924391 (+)
XLOC_024040 NA non-coding downstream 995056 19356344 ~ 19362087 (+)
XLOC_024041 NA non-coding downstream 1082663 19443951 ~ 19445512 (+)

Expression


Co-expression Network