XLOC_024027


Basic Information

Item Value
gene id XLOC_024027
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 18744021 ~ 18745029 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049221
TCTTTCTATCATGATTCAATCACCATGGTATTATGTCATTTACAATATGAGAAACTATTATACATATTGGAagcaatgcattttaaatatcTGCAGTGGTGGTGGAATGCCAGAAGACTTGTCACATCAGGTTCAATATTAGCACTTGTGAAGAAATGTAAGAAAGAGTCTTGCAGTACTAACACTGAGGAGTTTCCAGATCAACATTGGCCAGAAGTAGAGCCTCAAAGACAGCAGTCAAGAAGAGACTTCATCATGTGATAGGCAGGTGTGAAGAGAACATCTTGGGTCAAAGAGGACAAATCCAGGCAGGTTTCCACCGACATTGCCTGTAATCCATTGCTTATACTCTGAGACACGAATGAACACCTCAGGAAGATTGGGCTGTGCGCATCCATAACCATGACTGAGAACACCAGCCTGAACCCACACTGAACACTTAGTCATCAGTGGACCACCAGAGTCCCCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049221 True 469 lncRNA 0.43 2 18744021 18745029

Neighbor

gene id symbol gene type direction distance location
XLOC_024026 fam185a coding upstream 22724 18711804 ~ 18721297 (+)
XLOC_024025 met coding upstream 64950 18583877 ~ 18679071 (+)
XLOC_024024 cav1 coding upstream 166435 18563476 ~ 18577586 (+)
XLOC_024023 cav2 coding upstream 182226 18556588 ~ 18561795 (+)
XLOC_024022 tes coding upstream 247611 18475032 ~ 18496410 (+)
XLOC_024028 armc10 coding downstream 132646 18877675 ~ 18889001 (+)
XLOC_024029 CR391963.2 coding downstream 139649 18884678 ~ 18885569 (+)
XLOC_024030 cax2 coding downstream 144303 18889332 ~ 18906871 (+)
XLOC_024031 NA coding downstream 175514 18920543 ~ 18924391 (+)
XLOC_024032 tdg.2 coding downstream 208546 18953575 ~ 18978083 (+)
XLOC_023973 CR762411.1 misc upstream 3525912 15217824 ~ 15218109 (+)
XLOC_024020 NA non-coding upstream 382733 18359028 ~ 18361288 (+)
XLOC_024019 NA non-coding upstream 429094 18309315 ~ 18314927 (+)
XLOC_024018 NA non-coding upstream 493945 18107392 ~ 18250076 (+)
XLOC_024017 BX901919.1 non-coding upstream 646160 18097747 ~ 18097861 (+)
XLOC_024008 NA non-coding upstream 1208105 17528781 ~ 17535916 (+)
XLOC_024040 NA non-coding downstream 611315 19356344 ~ 19362087 (+)
XLOC_024041 NA non-coding downstream 698922 19443951 ~ 19445512 (+)
XLOC_024053 CU041386.1 non-coding downstream 1029530 19774559 ~ 19774675 (+)

Expression


Co-expression Network