XLOC_024028 (armc10)


Basic Information

Item Value
gene id XLOC_024028
gene name armc10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 18877675 ~ 18889001 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047682
ggcCTAGTTTGGAAACAATCGTGCAAACCAAGTGCTGCTCGCAAATCTTTTGCTCAGTATCAGGTGCATAGCAGCAAATTTGGCGGCGAactataatagtaatgataaattgtaatgataaatgtctaataatactgctaatatattatatattaaatataatatattaaatgcctGGGTGCTGATCCGCAGAGGACGAAGACTACAGGACTGTTATTTTGAAGGCGACGTCAGGAGCCCAGatttgattgaccaatcagaggaaatggGCGTTTCAGAACCGCCTACATGtggataatgaattttaaagtcatttatccgttttcctaccctaaaccaaaaaaagaaaatcgagccaaaatcagttatttaatttttttgtagccAAATAAAAAACCGAAAAACGGCCGTTTCCTCGTTTTTTAAATTTCGTTTAAGATCAAAAATCGAATGAACGCAACGTACACGGACCTTAAAAACACCGAAATCGTTTATGAACTCAACGCTTAACTCCGCGAAAGGTTTTGTTCGTCCACTTATACAGTAGGCGGTAGATGGCAGAAACCGTCAGTGTGATCAGGAACTGTGGGCATCTTTATTTATCCTGCTGCACGAGCATCATGTGTTTACAGTTTCTGCATTAATGTGTGAAATCTGGGAGATGGCAGATGATAATGTCATAGCCCGGCTCGGCAGCATGAAGGCTCTGCTGGGGATTGTGGCAGGAGCCGGAGCTTCATATGGCATTTATAAACTAGTCTTTGGTCGTACGAAAGATGGAGGAGTAAACAAAAAGAAGTCtgcaaaaattgtaaatattcagCCTGGAAGTTTGATGGCCAAAGTATCTGGATTTAAAGTTGTCAGTAAAAATGATCATCTGGATCCTTCTGCCGATACTGAATCTAATGATATTCACTCAAAATCTGCTGCCAGCCTGGAGCCTCGGCATCTCAGTATGCTCCTCTCTCTTCTGCAGAGCAGTCCAAACCCAGAAGAGAGGAGAAAAGTGCTCGTAACAATAGGAAATTCTGCTGCCTTCACAGTAAACCAGGATCTTCTGCGAGAATTTGGAGGTCTTCACATTATAGCAGGTTTTCTGTCAGACCCTTCTCCTGAGATTCGTGTTCAGACTCTGAACACTCTGAACAACTTAAGCATGAACATCCGCAATCAAGAGCAGCTTAAGATTTACATCCCTCCGGTGTTGCAGCTGATCGAAATGTCACCAGTGAACTCTGACCTTCAGCTTGCAGCTCTCCGATTACTGACTAATCTCTCAGTAACCGACTACCACCAGCATCTGATGAAGACCTCCATCACCCTCTTCCTGTCGCTGCTCGTAGTGAGCAATGAAGTCCTACAGATCCAAGTGCTGAAGGTCCTGGTAAATCTTTCCTCCAATCCAGATTTGATGGATGATATTGTGCAAGCTCAGGCTCCAGCCTCCTTGATCGTGTTGTTTGACGGCTGCACCAGCACATCAGTCCTCCTCCGCCTACTGTTTTTTGTGGGGAATCTGCGCGCGTGGAGACCTTCGGCTCAGGTGGCTGAAGCGCTGAGGAGGAGACCGGACTCTCTCTACTGTGTTTTACTGGACGGCTCCTCTCAGCTCCACCAGAAGCTGCCGCTGTTGTTTTCTCATCCAGATGAGGAGGTGAAGACGCAGGTAGCCAGACTCCTCACGTAACAAATAAAAGTTTTACTGCAGTTCTGCTGGTCTTCTATGCTAACTTAAATGGTTAGTTcacaccaaaatgaaaattctacaGTTTTCCCATCCTCATGATGTTccaaaccaataagactttcatttaatttcacaacacaaatgaagatatctttaaaatgaaatctGAGATTACCCGTTCACCCAAAACTCTCTTTAACCTTTCATTAGGATAACATCCATGTGAAACTGGCAGTTTATTTAAGGTCTTCGGAAGACACAAGCTTGCTTTATATGATGAACagacatttttggtatttgttatcatataaataataataataaacttatttttaaatatggcCTCTAAAAGTAGCATCTCAAGGCACTGTACAGACATAAAATATGCAGAAGTAAAAGATACATACAAGGATGTATGCAAAAAAATTTGATCAGTGAAAATAAATAGGAAATAAACTATAGCCAATTAAGCTTAAAGATGTCACATGACCCTCAAGAATGAATCTTACTACTGTAGGTATGCTACAACTTCAGCCAGCGTCAACAAAATGATCACCATGTTTACATGGCAGACCACATGGTGTGGGACAACTGGCATGCACTGACTCAGATTCGATTGGTCTGTGCAGCACTGCATAAAGTTGAATTTGACTAATGGTTCTCATGGAATCTCAATGTCATGTGATTGCTCAAGAATGAAACTCAACTCAATCGTGTCGTGTAACACTCGAGAATTAACCTCATTGGTTTATGTTGAACTCAAATAAGGCACTCAAGAATGAGCCTGATTATGTGTTTTCACACTGTGCTTAACCCATATTATCATTGTTCTAAACCACGGTTAAAATCACATGTTACACCTGTAATTCGATCGCTGTGTTAGCACCAAATTTTAGTTGGAGTTATGAAACTTTGCTCCAGAGTTAGGGTTAGCACTGCATTTGTGGGACAGTTAACCTTGCGTTGCGGGGCTAACTTTGCTCAGTGTGACACAGAGCAGTATTTCCTTGTTGTTGCAGGATGCTTAGTAACAGATCAGCCAATAAGAAATTAGGCAGCAGGGCTCATGTCATGTTAGCAATGGGAAGCTTGCATCATGTAAACAACAGTCAGCGAGAGAAAATagtttaaaccacactgaaaaaatgattttgCTATATGTTTAAACgacttgtttaaaacaaaaatcgattgtgtggaaggcagcattttttacagttcacGTAAACTGGGGTTGTCAGTCATTCAGATTCATACATTTGTACTTTTATGCTTGTTTTTCATTTCTTTGCGCATCTCAAATAGCTAAAGACTACacagtataatttttttaaactgacgAGCAGATCTGGAAATGCTGTGTAAAAAGGTTGCCGACACTCGAAATAAAAACGGTAACCTGGGGTTTTGGAATGTATGCAGTATGTACAGTGTAAAGCGTCTGTTATTGAATACCCAAGATCATTCATTAACTCCTGGTATAGTTTGAGTGGTGTAAAACCTGATTACAGATAACCCAAAATTCTGTTTATTCAGGGTTTTGgataaaaaatttaaagaaaaaaaagcccCATTAGTTCGACATGAAGCTCCACAATTGGTTGGTTCTTACCAAAGACATTGATTCATGCCACATGATTCTAAAGAACGAACCCCATTGGTAATTGGGGAAGTTGTGACATGACACTGGATAATTTACTTCATTGGTTCTTGTGGAAGTTTTGGGTGAACAGACTTTGAATGGAGCAGAAATCTCAGATTTGGTGCATAGTATTTTCATCTGTGTTTTAAGAATGATCAAAAGTCATACGGGTTTGTAAGGTCATGAGGATGAGCAAATGGTGACAAATTTTTATGTTGAggtgaattaaccctttaaatgtcaagACTTGCACTAATTCTTCAGTGTTGATCTACTCTACTCGTCGCAGGCCATCAGTATCTCCAACGAATGTTGGAAAATGAAGAAATGACACCCTTGGGCATTTTGAGCTATGTCTGTGAACACCCCAAATCTCTTAGAGAGAACCTTAAAGAACATCTCCACTGCCTAAAGTTTACTTGCCAAGAGAATGCATCTCAAAGCTTGCAGGGATTTTCTCTGACCACACTAAGTGCTTTGGATATCCAAATTAGTAGTGGGAAGGATTAAAGTAACGTCTCTACATGTCTTTAGAAATGGCTTTGGGGGGAAGGGGTTTGGAATAATGCAAGTGAAGTTTACCACTAAACAAAATTTATGCAGGTTATGCTGAAGCAGTAATGACCCAGTAAAATCCCTATTTTTACAGACTCTGTGCAAAGATTGTACTGCCATTGCTTGATTGTTCTTATGCTCTGTGATAAGATTGACATGGCtagcaatttattatttaataagtgTTTATCTTGTTATTAGGCAGTTATAAAATAGCACTTTTTTATAATTGCTACATTTATTTTGtgaataattctttaaaataaatatttgcttttTAGTAATGTGTGTTAGTTGTATTTGTTCATGGgaactgtattttaatatttatttttaaataacatttatgtaCACTTGAAGTACAGCTGTGTGTGAGAAACTAGTTGGAAACTAGTTTCAGTAACTTGCCTGGGGTGATATCCATTTATTACACATATATAAGTATCATAAACATTGACACTGTCAgcaatgttattaattatttttttcatattatgagacaattatttaaaaaaaagtttattttgcagtttaatacttgatttaactttattttgaaatgttttctgGCATTTCATCAGGTTTATTAAAGTGTTTAGTCATATTTacattgtaaagttttttttgtgcacatgAAGACAATTTGCCCtcttcaaatttattttaaattcagacCAATGGTGCTATTTTAACATGCTTTTGTcaattttaatatgttatttttcatttgttctaTTATTGCTTTATGTGTATTGtgtatagttttatattttacttttttagaaTTTTTGTGTGTTAAGTTGCTGTTTAGAGTTTTATATTTAAACTAAtgttattaaatgaaaataagatcCTGAGCCACGAgccaaaataaatgttaattttttatattttat
>TCONS_00047683
GATCAGGAACTGTGGGCATCTTTATTTATCCTGCTGCACGAGCATCATGTGTTTACAGTTTCTGCATTAATGTGTGAAATCTGGGAGATGGCAGATGATAATGTCATAGCCCGGCTCGGCAGCATGAAGGCTCTGCTGGGGATTGTGGCAGGAGCCGGAGCTTCATATGGCATTTATAAACTAGTCTTTGGTCGTACGAAAGATGGAGGAGTAAACAAAAAGAAGTCtgcaaaaattgtaaatattcagCCTGGAAGTTTGATGGCCAAAGTATCTGGATTTAAAGTTGTCAGTAAAAATGATCATCTGGATCCTTCTGCCGATACTGAATCTAATGATATTCACTCAAAATCTGCTGCCAGCCTGGAGCCTCGGCATCTCAGTATGCTCCTCTCTCTTCTGCAGAGCAGTCCAAACCCAGAAGAGAGGAGAAAAGTGCTCGTAACAATAGGAAATTCTGCTGCCTTCACAGTAAACCAGGATCTTCTGCGAGAATTTGGAGGTCTTCACATTATAGCAGGTTTTCTGTCAGACCCTTCTCCTGAGATTCGTGTTCAGACTCTGAACACTCTGAACAACTTAAGCATGAACATCCGCAATCAAGAGCAGCTTAAGATTTACATCCCTCCGGTGTTGCAGCTGATCGAAATGTCACCAGTGAACTCTGACCTTCAGCTTGCAGCTCTCCGATTACTGACTAATCTCTCAGTAACCGACTACCACCAGCATCTGATGAAGACCTCCATCACCCTCTTCCTGTCGCTGCTCGTAGTGAGCAATGAAGTCCTACAGATCCAAGTGCTGAAGGTCCTGGTAAATCTTTCCTCCAATCCAGATTTGATGGATGATATTGTGCAAGCTCAGGCTCCAGCCTCCTTGATCGTGTTGTTTGACGGCTGCACCAGCACATCAGTCCTCCTCCGCCTACTGTTTTTTGTGGGGAATCTGCGCGCGTGGAGACCTTCGGCTCAGGTGGCTGAAGCGCTGAGGAGGAGACCGGACTCTCTCTACTGTGTTTTACTGGACGGCTCCTCTCAGCTCCACCAGAAGCTGCCGCTGTTGTTTTCTCATCCAGATGAGGAGGTGAAGACGCAGGCCATCAGTATCTCCAACGAATGTTGGAAAATGAAGAAATGACACCCTTGGGCATTTTGAGCTATGTCTGTGAACACCCCAAATCTCTTAGAGAGAACCTTAAAGAACATCTCCACTGCCTAAAGTTTACTTGCCAAGAGAATGCATCTCAAAGCTTGCAGGGATTTTCTCTGACCACACTAAGTGCTTTGGATATCCAAATTAGTAGTGGGAAGGATTAAAGTAACGTCTCTACATGTCTTTAGAAATGGCTTTGGGGGGAAGGGGTTTGGAATAATGCAAGTGAAGTTTACCACTAAACAAAATTTATGCAGGTTATGCTGAAGCAGTAATGACCCAGTAAAATCCCTATTTTTACAGACTCTGTGCAAAGATTGTACTGCCATTGCTTGATTGTTCTTATGCTCTGTGATAAGATTGACATGGCtagcaatttattatttaataagtgTTTATCTTGTTATTAGGCAGTTATAAAATAGCACTTTTTTATAATTGCTACATTTATTTTGtgaataattctttaaaataaatatttgcttttTA

Function

symbol description
armc10 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in head and otic vesicle. Orthologous to human ARMC10 (armadillo repeat containing 10).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-131121-630 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in head and otic vesicle. Orthologous to human ARMC10 (armadillo repeat containing 10).

Ensembl:

ensembl_id ENSDARG00000062960

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047682 False 4783 mRNA 0.38 6 18877675 18889001
TCONS_00047683 True 1641 mRNA 0.44 7 18878249 18888385

Neighbor

gene id symbol gene type direction distance location
XLOC_024027 NA coding upstream 132646 18744021 ~ 18745029 (+)
XLOC_024026 fam185a coding upstream 156378 18711804 ~ 18721297 (+)
XLOC_024025 met coding upstream 198604 18583877 ~ 18679071 (+)
XLOC_024024 cav1 coding upstream 300089 18563476 ~ 18577586 (+)
XLOC_024023 cav2 coding upstream 315880 18556588 ~ 18561795 (+)
XLOC_024030 cax2 coding downstream 331 18889332 ~ 18906871 (+)
XLOC_024031 NA coding downstream 31542 18920543 ~ 18924391 (+)
XLOC_024032 tdg.2 coding downstream 64574 18953575 ~ 18978083 (+)
XLOC_024033 samm50 coding downstream 119496 19008497 ~ 19021823 (+)
XLOC_024034 lrtm2b coding downstream 152328 19041329 ~ 19045977 (+)
XLOC_023973 CR762411.1 misc upstream 3659566 15217824 ~ 15218109 (+)
XLOC_024020 NA non-coding upstream 516387 18359028 ~ 18361288 (+)
XLOC_024019 NA non-coding upstream 562748 18309315 ~ 18314927 (+)
XLOC_024018 NA non-coding upstream 627599 18107392 ~ 18250076 (+)
XLOC_024017 BX901919.1 non-coding upstream 779814 18097747 ~ 18097861 (+)
XLOC_024040 NA non-coding downstream 467343 19356344 ~ 19362087 (+)
XLOC_024041 NA non-coding downstream 554950 19443951 ~ 19445512 (+)
XLOC_024053 CU041386.1 non-coding downstream 885558 19774559 ~ 19774675 (+)
XLOC_024057 NA non-coding downstream 1098067 19987068 ~ 19998226 (+)

Expression


Co-expression Network