G467221


Basic Information

Item Value
gene id G467221
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 4587908 ~ 4597359 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU530818
ATGTCGCCTGACTACAATATTTCATCTTAATAAATCAGTAACTAGATGCTGTATTAAACTTGGCGTGTTTTACCTGCCTACATACCGTAGATCACAAGTCCATAATAAGTCTATAGGGCTAACAGGCTAGCAACTAGTACTGTTAGCTACGCAGATAGCCACAaagaattgttagctagctacctacgaAGAGTTGACATCTCCGACCCTCCACAGTTTTAGGTCATGTTTGCCTGTTTAAACTATCTGGTTAGCTACATTATTACAATTCACATACGTAGCTGAAAGTTATGAACTAAAATGTTTGCTTTGTGCGTATCTTGTTtggtctattgttgccattgtcctggctggaagaaggGTCAGTGAacggggaggtgcagcgtgaggtaatacactaggggaggtgcagcgtgaggtaatacactaggggaggtgcagcgtgaggtaatacactaggggaggtgcagcgtgaggtaatacacaAGAGGGGAAATGCTTCTCAAattgaatgtttgtttttttacattctcCACACTTTGTCCTCACAtgaacgtactcaagagaacgtgGTCGGAGAATGCACCCCCGAGCATGAGAGCGGAACACCCTGT
>TU530819
ATGTCGCCTGACTACAATATTTCATCTTAATAAATCAGTAACTAGATGCTGTATTAAACTTGGCGTGTTTTACCTGCCTACATACCGTAGATCACAAGTCCATAATAAGTCTATAGGGCTAACAGGCTAGCAATGCTGCTGCTCCCGAGGATGAAACGGTTCCAGTCCTCACTTTGTCCACTAGGTAGCGCTAGCTGTCTCTACTGAGGGTGCAGACAGAGCTTTGTCCACTAGGTATTGCTAGCTGTGTACTGCTCGATGTCTTCTTTATACTGCTTCACTGTTTAACCCGTTTGATAATCAGTCCCTCCTCCAAGCCTGAGCTTCAGCTAAGACTAAAGCTCTTCTGACTTGCATAATAATTGTACCGTAAAGTTTTAAGTTGAAATGTTTTTTGTggaaaaaaaagatttaaaaaaaaatgtgtctgcatttaaaaacaaatgaaattaCGGGAATTAAAATTACAAAGCATACCAA
>TU530822
ATGTCGCCTGACTACAATATTTCATCTTAATAAATCAGTAACTAGATGCTGTATTAAACTTGGCGTGTTTTACCTGCCTACATACCGTAGATCACAAGTCCATAATAAGTCTATAGGGCTAACAGGCTAGCAATGCTGCTGCTCCCGAGGATGAAACGGTTCCAGTCCTCACTTTGTCCACTAGGTAGCGCTAGCTGTCTCTACTGAGGGTGCAGACAGAGCTTTGTCCACTAGGTATTGCTAGCTGTGTACTGCTCGATGTCTTCTTTATACTGCTTCACTGTTTAACCCGTTTGATAATCAGTCCCTCCTCCAAGCCTGAGCTTCAGCTAAGACTAAAGCTCTTCTGACTTGCATAATAATT
>TU530824
ATGTCGCCTGACTACAATATTTCATCTTAATAAATCAGTAACTAGATGCTGTATTAAACTTGGCGTGTTTTACCTGCCTACATACCGTAGATCACAAGTCCATAATAAGTCTATAGGGCTAACAGGCTAGCAACTAGTACTGTTAGCTACGCAGATAGCCACAaagaattgttagctagctacctacgaAGAGTTGACATCTCCGACCCTCCACAGTTTTAGGTCATGTTTGCCTGTTTAAACTATCTGGTTAGCTACATTATTACAATTCACATACGTAGCTGAAAGTTATGAACTAAAATGTTTGCTTTGTGCGTATCTTGTTtggtctattgttgccattgtcctggctggaagaaggGTCAGTGAacggggaggtgcagcgtgaggtaatacactaggggaggtgcagcgtgaggtaatacactaggggaggtgcagcgtgaggtaatacactaggggagatgcagcgtgaggtaatacactaggggaggtgcagcgtgaggtaatacacaAGAGGGGAAATGCTTCTCAAattgaatgtttgtttttttacattctcCACACTTTGTCCTCACAtgaacgtactcaagagaacgtgGTCGGAGAATGCACCCCCGAGCATGAGAGCGGAACACCCTGT
>TU530817
atcaggagtgacattagggagaggggggacaggtcTGATATCATGAGTAATAATATGGGGGGTTATAGTTCTGATATCAGGGGCTAATATGGAGGTACCTGTAGCTCATACAATACATGGAGGCATAGAGTTGGATAAAGGGCACATATCAATGTCTCTGCCCATGTTAAAACAGGGTTTGTGGCAAGTGAGCCCTCTGTCCAACTCGGGTTTATATTGAGGTTTTTTGCAGTTGTATTGGTCATCACCAGCATTTTTATCAGAGTCACCTCACTTGTAAATGAACAAATTAATGAAAGTGTGGCTTTGTTTTTCAAATCtgaacaccccccccctcccccctccccaatgCGAGGAGTCGCTGTTATTTTATTTAGTATTTTTCTTTCGTTGTGCTGCGTTATTTGTCATGAAAACATCTATTCTGAAGTGGCCATTTGCCTTGTAAAGTAGTGTTTTACTGTGTGATTGATACAGTCATTTCTAAGTACTGTGGAATTTACATCGTAACCGTATTGTAAAGTAcctcaaaacaaacaaaaaaatatacaaacgTGTTGCCAAATAATGCCAATGAAAAGACAACTATAATAATTACTATTATTAACCATGAATTATCAAGTGCAAGTAAGACAAAAAAATAACCTGAAGTGTCTAGACGAGAGTTGCTGACGTCTCATTGCCCTCatggtttttttttttcttctctagtAGTGCTAGTTATCCTGAAAGCCTCTACACTGCTGTGTTAACGCCACATGTCTGGCTGCGATGTAAACAATGAagagaataaatatactataTTTTTCTACCATCTGAGTGAAGCACTCCATACACCGTGAGGGTGGCGGAATGCGCTGGGAACCAATGGGAGATCGCTGGCAACGGGTCTTAGGCTATGACGCTATCGCCTGTAACCTAGGTAACAAAGGTTAAGACaaataaatattttcatTTGACCAGCACCGTTGCTGATTCTACAGGATTAGCGGTCGTGAAAATCAAGTAATAAAGtgaccattttattttattttatttttttatgaataACAGTAAAACAGTTATCCTATGTGTTGGCTGTGTAGTTAGCGGGAAATTCACtacgattgtgttttttttttattactttgGTTGGCGAACTTTCTATAGGCTACTGCGAACAGTCACTGTCATTTTGACTCAAATTGCTAGTCCCATTGTTTAGACTTGTTTCCGTATTTATGCAAAGATTTATGGGATATTAGAATCCTATTGTCTTAACCTTTGTTCATTTTAAACCTAGCCCTCAACCAGGAAGTGGACGTGACGACACAGGAAAAACAATCTCCTCCGTTCCAACGCGATTGACCACGGTTCGACTCTAACCCAGTGCGCTCTCCTCGCCTTACGTTAGATGGCGTGTCAGTTTGCCGATATAGATGCAGACTTTTAAATGACCATTTTTATTTTAGATAAAAAACACTTTGTAATTTTGTTTCCCTATACCGCTTTGATGAGCGGCCAGACTGGGGTCACTTGTTTGAAAAGTAGGAAATGGAAACAGAAAGCCTATATATAttacactgtttttttttttaccatccaCGTCTGGCCCATAAATTAACAGCAGGCCTGAAATCAGTATCACTAAGGACAGAGCTTAGACTGGTAACACTTAAGGGCTGGTCTCAAATCAGCTCTTCTCAGAATAGGTCTGTAGACGGGAGATTATCTGAAATGGGGTTTTGCCGGAGGCGGCTTTCGCTCTTGCGGCTCATGTTCCTTTTCCTTTGACAAACACTGAGTTGCTCTGTGGGCTATGAAGGCTTATTCCTGCCAACATTTTGGCATTCATCTGCTTCCATAGATTGAGACCCTTTTGGGACACACTTGGTCATTCTTATTTTCATGCATTCTCAGTCCTGATAGGCTGATGCACCGCTCAAGGTAGAGAGGGACCACATTTTGATCAATCAATATTAGCTACCGATCATCAATCAAAACAATAACCAGTGGCTGATGTAGTTGCCCATTGGGAGTTGGTGACAGTTTGTTACCCAcaagtggcaccttaattggggaggactggctcgtggtaatgactggagcgacatcagcggaatggtatcaaacacatggtttccatggtttccaggtgttttgatgccgttccatttgctccgttcaagacattattatgagccgtcctccaatcagcagcctcctgtgttgTTACCATGCCGACGTGTGATAGCAGACAGCCAACCCTCTCTCAGTTCTGCGGGAACAGAACAGAATGTGACAAAGGGTTTATTTTCTGAACGTTAATATTAGATGAAGCTGCTTGTTGTGACTGcaccgctgtctctctctctctctctctctctctctgtagagacaCTGTTCTTCTCAGGGTGGATGGGTGTAACGGTATTGTCTCCCCACGTGGTGGCGCTGTTGCTTTTAGCCCAGAAAGCCAGACTGAATCACGCTACGTTTTAGAATGGTTTCACTACTGTAATAAAGGGAGCTGAATTCAGGATGGATTTCCACTGCTGCTGCTCCCGAGGATGAAACGGTTCCAGTCCTCACTTTGTCCACTAGGTAGCGCTAGCTGTCTCTACTGAGGGTGCAGACAGAGCTTTGTCCACTAGGTATTGCTAGCTGTGTACTGCTCGATGTCTTCTTTATACTGCTTCACTGTTTAACCCGTTTGATAATCAGTCCCTCCTCCAAGCCTGAGCTTCAGCTAAGACTAAAGCTCTTCTGACTTGCATAATAATT

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU530818 False 614 lncRNA 0.44 3 4587908 4588579
TU530819 False 480 lncRNA 0.39 2 4587908 4597359
TU530822 False 364 lncRNA 0.44 2 4587908 4597243
TU530824 False 643 lncRNA 0.44 2 4587908 4588579
TU530817 True 2763 lncRNA 0.42 2 4594458 4597243

Neighbor

gene id symbol gene type direction distance location
LOC110525072 LOC106585937 coding upstream 4548 4447482 ~ 4583360 (+)
LOC110511702 LOC106585945 coding upstream 262226 4143188 ~ 4325682 (+)
LOC110525166 LOC106585946 coding upstream 310403 4258161 ~ 4277505 (+)
LOC110525165 LOC105014571 coding upstream 465504 4049477 ~ 4122404 (+)
LOC110525164 LOC106585954 coding upstream 555014 3996133 ~ 4032894 (+)
LOC110525169 LOC106585939 coding downstream 46595 4643954 ~ 4650871 (+)
LOC110525174 gpx8 coding downstream 193479 4790838 ~ 4792423 (+)
bmp2k LOC106585926 coding downstream 245516 4842875 ~ 4935449 (+)
LOC118964809 NA coding downstream 317507 4914866 ~ 4918091 (+)
prdm8b LOC106585925 coding downstream 982415 5579774 ~ 5585518 (+)
G467285 NA non-coding upstream 36155 4550623 ~ 4551753 (+)
G467274 NA non-coding upstream 55054 4527615 ~ 4532854 (+)
G467261 NA non-coding upstream 90444 4496648 ~ 4497464 (+)
G467206 NA non-coding upstream 165731 4421510 ~ 4422177 (+)
G467181 NA non-coding upstream 218067 4369215 ~ 4369841 (+)
G467293 LOC106570909 non-coding downstream 5213 4602572 ~ 4603398 (+)
G467294 LOC105014525 non-coding downstream 12505 4609864 ~ 4610874 (+)
G467643 NA non-coding downstream 34203 4631562 ~ 4632132 (+)
G467700 NA non-coding downstream 83330 4680689 ~ 4680895 (+)
G467705 NA non-coding downstream 93084 4690443 ~ 4690651 (+)
G466813 NA other upstream 814568 3772864 ~ 3773340 (+)
G465578 NA other upstream 1605483 2978842 ~ 2982425 (+)
LOC110525071 LOC106585963 other upstream 1753798 2743964 ~ 2866482 (+)
zfr zfr other upstream 2178650 2342330 ~ 2451362 (+)
G468732 NA other downstream 1511020 6108379 ~ 6156681 (+)
G468643 LOC106607869 other downstream 1597413 6194772 ~ 6199155 (+)
G468755 NA other downstream 1612840 6210199 ~ 6244501 (+)
G468768 NA other downstream 1657117 6254476 ~ 6371873 (+)
G468791 NA other downstream 1780280 6350096 ~ 6379704 (+)

Expression


Co-expression Network