G467293 (LOC106570909)


Basic Information

Item Value
gene id G467293
gene name LOC106570909
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 4602572 ~ 4603398 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU530930
AGcagtttaatatggaacagtGACTGTAGTTGAGAAGAGGGAACACAGTGGTGAACAATCTGGACGTGCCAACGTTTGTTGTGGCAAACCATCAAAGTAGGTTTTGATAAATATCCAGGAACACAGAGGCGTAGGAGGAGAGAATCTGGGAAGACGTCTCCTTACTGGGTTTTAAGGGATAGGGGacaaggagtatgcaattgagatcttcccactgtctgtctgtcctcttgtGTGTCTGTGGACGACTCTATGATAATAAATGATCAAGCTGCTATACCTACCCATCTATCTGACCTACGTTCACCTGCTGGGGGCCAAGCAGTCAAACACGTCTTCATGTGGAGTTGATTATCCGCTTTCATTCATAAACATTTATATAGATGTATTTAAATTGTTCAATTGCCTCTTGCTCACAACACTCGCTCTCTGACGTTCACATTCTGTGTCCTGTCATGTACACATTGTAATAGAAtgtggtagtggtgtgggGGCTACGGCAACGCCGGGGGATGCTGCTCGTTCTTCAGTTCTCGGAGGTTGAGGTTCTGCAGAGCCACGTCTAGGGTCATGACCCCCACGCAGCCCATATCTTCGAAGGCGGCGAAGGCATCCGAGCCTCGCGTCACGGCATCGTGGTAGTCACGGAGATCGTCGTCGTCTTCGCTGTGGTCGGGATTGGCCagcagggtggagaggaggagctCCGTGACGAAGAGAGAGCGGTCCGCCCACTGGCCCTCACATAGCTGGTTTTCCGCCTCTGACAACCTCGGC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU530930 True 777 lncRNA 0.51 2 4602572 4603398

Neighbor

gene id symbol gene type direction distance location
LOC118964808 NA coding upstream 8382 4592804 ~ 4594190 (+)
LOC110525072 LOC106585937 coding upstream 19212 4447482 ~ 4583360 (+)
LOC110511702 LOC106585945 coding upstream 276890 4143188 ~ 4325682 (+)
LOC110525166 LOC106585946 coding upstream 325067 4258161 ~ 4277505 (+)
LOC110525165 LOC105014571 coding upstream 480168 4049477 ~ 4122404 (+)
LOC110525169 LOC106585939 coding downstream 40556 4643954 ~ 4650871 (+)
LOC110525174 gpx8 coding downstream 187440 4790838 ~ 4792423 (+)
bmp2k LOC106585926 coding downstream 239477 4842875 ~ 4935449 (+)
LOC118964809 NA coding downstream 311468 4914866 ~ 4918091 (+)
prdm8b LOC106585925 coding downstream 976376 5579774 ~ 5585518 (+)
G467221 NA non-coding upstream 5213 4587908 ~ 4597359 (+)
G467285 NA non-coding upstream 50819 4550623 ~ 4551753 (+)
G467274 NA non-coding upstream 69718 4527615 ~ 4532854 (+)
G467261 NA non-coding upstream 105108 4496648 ~ 4497464 (+)
G467206 NA non-coding upstream 180395 4421510 ~ 4422177 (+)
G467294 LOC105014525 non-coding downstream 6466 4609864 ~ 4610874 (+)
G467643 NA non-coding downstream 28164 4631562 ~ 4632132 (+)
G467700 NA non-coding downstream 77291 4680689 ~ 4680895 (+)
G467705 NA non-coding downstream 87045 4690443 ~ 4690651 (+)
G467713 NA non-coding downstream 93847 4697245 ~ 4697483 (+)
G466813 NA other upstream 829232 3772864 ~ 3773340 (+)
G465578 NA other upstream 1620147 2978842 ~ 2982425 (+)
LOC110525071 LOC106585963 other upstream 1768462 2743964 ~ 2866482 (+)
zfr zfr other upstream 2193314 2342330 ~ 2451362 (+)
G468732 NA other downstream 1504981 6108379 ~ 6156681 (+)
G468643 LOC106607869 other downstream 1591374 6194772 ~ 6199155 (+)
G468755 NA other downstream 1606801 6210199 ~ 6244501 (+)
G468768 NA other downstream 1651078 6254476 ~ 6371873 (+)
G468791 NA other downstream 1774241 6350096 ~ 6379704 (+)

Expression


Co-expression Network