XLOC_024041


Basic Information

Item Value
gene id XLOC_024041
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 19443951 ~ 19445512 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049225
GTGCCATTAGCATTTGCGTTGGTACATCTGTAGATGGTTGCTGcacattatttatgtttattaataaatacatatatttagagACATCTCTCAAAGATGTTACTATTGCTGGATATCACACAGGCATCAATAGACTTTCTCTCAGTAGACATCACCGGTCTCTCACAGACATCTGCACATCATTGGTCTCTTATAGACATCACTAGTCCTTCATTGGAcatcacagacatcactagtctctcgcTGGACATCACTAGTCGCTCGCTGGACATCACTAGTCCTTTATTGGACAtcagtctctcacagacatcactagtctctcactggaCATCACTAATCTCTCGCTGGACATCATTAATCCTTTATTGGATATCAGTCCCTCACAGACATCACTAACCTCTCACTGGACATCACAGACatcactagtctctcgcTGGACATCagtagtctctctctctctctggtctgCTGTGATCTTGATCTGCACTTCTTCATTGACTGTAGTTTCTTAACCAGAACTTTGTCACTAAGAGTTTTTTCAATCAGGTTGATATCAGGACTCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049225 True 563 lncRNA 0.42 2 19443951 19445512

Neighbor

gene id symbol gene type direction distance location
XLOC_024040 NA coding upstream 81864 19356344 ~ 19362087 (+)
XLOC_024039 ppip5k1b coding upstream 96874 19238175 ~ 19347077 (+)
XLOC_024038 hapln3 coding upstream 238076 19201231 ~ 19205875 (+)
XLOC_024036 mfge8b coding upstream 251648 19149241 ~ 19192303 (+)
XLOC_024037 BX294110.3 coding upstream 268425 19170500 ~ 19175526 (+)
XLOC_024042 glsl coding downstream 39686 19485198 ~ 19521245 (+)
XLOC_024043 sh3gl3b coding downstream 77442 19522954 ~ 19537323 (+)
XLOC_024044 nedd1 coding downstream 95507 19541019 ~ 19556986 (+)
XLOC_024045 lyrm5b coding downstream 112116 19557628 ~ 19561261 (+)
XLOC_024046 zgc:171459 coding downstream 221109 19666621 ~ 19668179 (+)
XLOC_023973 CR762411.1 misc upstream 4225842 15217824 ~ 15218109 (+)
XLOC_024031 NA non-coding upstream 519560 18920543 ~ 18924391 (+)
XLOC_024029 CR391963.2 non-coding upstream 558382 18884678 ~ 18885569 (+)
XLOC_024027 NA non-coding upstream 698922 18744021 ~ 18745029 (+)
XLOC_024020 NA non-coding upstream 1082663 18359028 ~ 18361288 (+)
XLOC_024053 CU041386.1 non-coding downstream 329047 19774559 ~ 19774675 (+)
XLOC_024057 NA non-coding downstream 541556 19987068 ~ 19998226 (+)
XLOC_024061 NA non-coding downstream 657753 20103265 ~ 20109429 (+)
XLOC_024066 CR846093.3 non-coding downstream 1146971 20592483 ~ 20592597 (+)
XLOC_024067 CR846093.2 non-coding downstream 1158384 20603896 ~ 20604012 (+)

Expression


Co-expression Network