XLOC_024043 (sh3gl3b)


Basic Information

Item Value
gene id XLOC_024043
gene name sh3gl3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 19522954 ~ 19537323 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047708
GTCCCAAGGTGCAAAATAACAGCATACATTGCGACGGAAGGAAAGAGGGTGGAGAGAGCAATGTGGACTCACGGGCAGAGATAGCTAATGCACCGACCGAGCCATCCCGACTCGACGGTCCCTGGGACACATTTAAGGACGAAGGATGTCAGTGGCCGGGTTTAAGAAACAGTTTCACAAAGCTAGTCAGTTGCTAAAAGAAAAGATCAATGGCGTTGAAGGAACAAAACTGGATGAGGAGTTCCTCAGCATGGAAaggAAAACTGAAATTACCCACAAACTCATTCTTGATATTGTTCCAAAAACGATTGGATATCTTCAGCCGAACCCAGCTTACAGGGCGAAGCTCAGCATGCTCAGCACGGTGTCTAGAATTCGTGGACATGTGAAGGCAGTGGGTTACCCTCAGACAGAGGGCATTCTGGGAGACTGCATGCTGCAATACGGCAGTGAGCTTGGAGCTGAATCTGGCTTTGGTTTTGCTTTGCTTGAAATGGGAGAGGCGTTGAAACAAGTCGCCCAGGCCAGAGACTGTATGGACGTCCGAGTGAAACGAGCCTTCATCGATCCTCTGCAATCCCTTCAGCAGAAAGAACTGAAGGAAATTGGGTTTCATCTGAGAAAACTTGAAGGTCGGCGTCTGGATTTTGATTACAAGAAGAGACGTAAAGGAAAGATTGCAGACTCTGAAATTAAGAAAGCGTTCGACAAGTTTGAAGAATCCAAAGAAATGGCTGAAAGATGCATGTTTAATCTCTTAGAGAAAGATGTCCAGCGGATGCAGCACCTCTCAGGTCTTTTAGAAGCAGTAATAGACTATCATCGCCAGTCAAGTCAGATTCTGGAAAACCTCAGGAGTAATTTACAGACCAAGATAAGAGACGCAAGCAATAAGCCCAAAAGGGAATTTGCATCTAAATCAGTTGCGAGCACAGTGTGCTATTCGGATATTTATGGATTTTCCACATGCTCATCCGGACCGTCATCAGATACTGAAATTACTGAAGCTTTGAGTGAGAAATATGCTCCGGTTGTGGTTCACCGTCCTGAACAAGTCACCATTAAAACTCCAACAACAGACAAACCAGCAAGCATCAATGATAGAGCTCCCCCCCTGGATCAGCCCTGCTGTCAGGCACTGTACAGTTTCCAGGCAGAAAACCAGGGCGAGCTGGGCTTTAAAGAGGGCGACATCATCATTCTGACCAGCCAGATAGATGAGAACTGGTATGAGGGGATGATCAGAGGCCAGTCTGGCTTATTTCCCATGAACTACGTCAAAGTCCTTGTACCTCTGCCACAGTGACGACCACAGGACACAGCTGGATAACATGAACATTAAGAAGCTCTGATTATGTGATAATAAGGTTAATATGTGAAGCACTTCTGAGCCCTTGCTGTATATTTATCTGTATTATTACTATGCAAAGTTACGTATCCTGcctttttggttattttttacgAATCTTTCAAGATGTTAAATAGTTACACTGCTGTATTAACGTCTTAAGCATTTAATAGCATCCAAACACAAATTCCTTCTCAGGACGGATCCTGTCTATCCATATTGATCATCCAGTCCTTTGTCTTTATCAAAAATAAGTCCTAGTGGGCACTGCATTAATACGCTGCCGTTTATATCCATTGTTTTTGCTAGGAATGTTGGATCATTTACTGGTTATTAACAAGCACTGCAGTCTTATGAACTGTCTCCGATGTgtttattaaaggaatagttcactcaaaaaatccTGTTCAATTTCTCACTCTCTGACCATCCAAGATGGAGGTCACAGTTTTAAGTAGACCATTAAAAAAATTCAAGCTGAAATTGTGCTCTTTTGTCATTCTTAAAATGCCAACAACTGCTGCCAGTACTTTAAgagtaaaacaacaaaacatatacaggcaaaactaaataaatgcccATGATCTTGAAGATACATTTGAGCTGAAATGAGTGGACAAATGTTAATGTATATTCACTTTCAAGCTCACATGTGAGCTAACACTATTTGTTCACCACAATTTTATGTAAGTTGCAGCATACATAATAAACACGAGGAAAAATACAACATTTTCCGTACATGTCCTAAATCTTTGTTGTAAACGATGTCAATTCAAGTTTGTCTTGcaattaaaggtatagtttaccCCAAAA
>TCONS_00047709
ATGTCAGTGGCCGGGTTTAAGAAACAGTTTCACAAAGCTAGTCAGTTGCTAAAAGAAAAGATCAATGGCGTTGAAGGAACAAAACTGGATGAGGAGTTCCTCAGCATGGAAaggAAAACTGAAATTACCCACAAACTCATTCTTGATATTGTTCCAAAAACGATTGGATATCTTCAGCCGAACCCAGCTTACAGGGCGAAGCTCAGCATGCTCAGCACGGTGTCTAGAATTCGTGGACATGTGAAGGCAGTGGGTTACCCTCAGACAGAGGGCATTCTGGGAGACTGCATGCTGCAATACGGCAGTGAGCTTGGAGCTGAATCTGGCTTTGGTTTTGCTTTGCTTGAAATGGGAGAGGCGTTGAAACAAGTCGCCCAGGCCAGAGACTGTATGGACGTCCGAGTGAAACGAGCCTTCATCGATCCTCTGCAATCCCTTCAGCAGAAAGAACTGAAGGAAATTGGGTTTCATCTGAGAAAACTTGAAGGTCGGCGTCTGGATTTTGATTACAAGAAGAGACGTAAAGGAAAGATTGCAGACTCTGAAATTAAGAAAGCGTTCGACAAGTTTGAAGAATCCAAAGAAATGGCTGAAAGATGCATGTTTAATCTCTTAGAGAAAGATGTCCAGCGGATGCAGCACCTCTCAGGTCTTTTAGAAGCAGTAATAGACTATCATCGCCAGTCAAGTCAGATTCTGGAAAACCTCAGGAGTAATTTACAGACCAAGATAAGAGACGCAAGCAATAAGCCCAAAAGGGAATTTGCATCTAAATCAGTTGCGAGCACAGTGTGCTATTCGGATATTTATGGATTTTCCACATGCTCATCCGGACCGTCATCAGATGCTCCGGTTGTGGTTCACCGTCCTGAACAAGTCACCATTAAAACTCCAACAACAGACAAACCAGCAAGCATCAATGATAGAGCTCCCCCCCTGGATCAGCCCTGCTGTCAGGCACTGTACAGTTTCCAGGCAGAAAACCAGGGCGAGCTGGGCTTTAAAGAGGGCGACATCATCATTCTGACCAGCCAGATAGATGAGAACTGGTATGAGGGGATGATCAGAGGCCAGTCTGGCTTATTTCCCATGAACTACGTCAAAGTCCTTGTACCTCTGCCACAGTGACGACCACAGGACACAGCTGGATAACATGAACATTAAGAAGCTCTGATTATGTGATAATAAGGTTAATATGTGAAGCACTTCTGAGCCCTTGCTGTATATTTATCTGTATTATTACTATGCAAAGTTACGTATCCTGcctttttggttattttttacgAATCTTTCAAGATGTTAAATAGTTACACTGCTGTATTAACGTCTTAAGCATTTAATAGCATCCAAACACAAATTCCTTCTCAGGACGGATCCTGTCTATCCATATTGATCATCCAGTCCTTTGTCTTTATCAAAAATAAGTCCTAGTGGGCACTGCATTAATACGCTGCCGTTTATATCCATTGTTTTTGCTAGGAATGTTGGATCATTTACTGGTTATTAACAAGCACTGCAGTCTTATGAACTGTCTCCGATGTgtttattaaaggaatagttcactcaaaaaatccTGTTCAATTTCTCACTCTCTGACCATCCAAGATGGAGGTCACAGTTTTAAGTAGACCATTAAAAAAATTCAAGCTGAAATTGTGCTCTTTTGTCATTCTTAAAATGCCAACAACTGCTGCCAGTACTTTAAgagtaaaacaacaaaacatatacaggcaaaactaaataaatgcccATGATCTTGAAGATACATTTGAGCTGAAATGAGTGGACAAATGTTAATGTATATTCACTTTCAAGCTCACATGTGAGCTAACACTATTTGTTCACCACAATTTTATGTAAGTTGCAGCATACATAATAAACACGAGGAAAAATACAACATTTTCCGTACATGTCCTAAATCTTTGTTGTAAACGATGTCAATTCAAGTTTGTCTTGcaattaaaggtatagtttaccCCAAAACACAAATTATGTCATTGTTTACTCTCCTTTTGAGTAAAGTTTGagttttaaccattttttttcaaacagtttgagttttttttttttcttctgttgaacaaaaaataaaacattaaaggcaaggcaagtttatttatatagcacatttcatacacagtggcaattcaaagtgctttacataaacaggaataaaaaagacaagtttaggacataaaatgcagacaataaaaatgattaaaaacagataaaaacaatttaaaatgtgttaaaataggttataaaagaatgaaaatgaaaacgaaaaaacataatagtgcgatctgtcggacgtagcacagtgctcattcagtaaaggcacagcttaacagatgtgttttcagtcttgatttgaacatgcctaatgttggagcacatctgattatttctggaagctgattccagcagcgaggagcatagtggctgaaggcagattcaccctgctttgactgaactcttggaatttctagtttatatgatcccagagatctgagtgatctgttgggtttgtattctgtgagcatatctgtaatgtattgaggtcctaggccatttagtgatttatagaccagtaataatactttaaagtctattctgaatgtaactgggagccagtgtagaaacctgaggacaggtgtgatgtgcttcgatttcctgcttctggtcagaattctggctgcagcattctggatgagctgcaactgtctgactgtttttttggaaggccagtgaggaggccgttacagtaatccaccctgctgctgataaaagcatgaacaagtttctctaagtcttcactggaaacaaagcatctaattcttgcaatatttttgagatgatagtatgctgatttactgactgctttgacatgactgttgaaactcagatctgactccagagtcacaccaagattcttgaccttattttttgttgtttgacccttaaagtcaaggtac
>TCONS_00047710
TGAAAGATGCATGTTTAATCTCTTAGAGAAAGATGTCCAGCGGATGCAGCACCTCTCAGGTCTTTTAGAAGCAGTAATAGACTATCATCGCCAGTCAAGTCAGATTCTGGAAAACCTCAGGAGTAATTTACAGACCAAGATAAGAGACGCAAGCAATAAGCCCAAAAGGGAATTTGCATCTAAATCAGTTGCGAGCACAGTGTGCTATTCGGATATTTATGGATTTTCCACATGCTCATCCGGACCGTCATCAGATGCTCCGGTTGTGGTTCACCGTCCTGAACAAGTCACCATTAAAACTCCAACAACAGACAAACCAGCAAGCATCAATGATAGAGCTCCCCCCCTGGATCAGCCCTGCTGTCAGGCACTGTACAGTTTCCAGGCAGAAAACCAGGGCGAGCTGGGCTTTAAAGAGGGCGACATCATCATTCTGACCAGCCAGATAGATGAGAACTGGTATGAGGGGATGATCAGAGGCCAGTCTGGCTTATTTCCCATGAACTACGTCAAAGTCCTTGTACCTCTGCCACAGTGACGACCACAGGACACAGCTGGATAACATGAACATTAAGAAGCTCTGATTATGTGATAATAAGGTTAATATGTGAAGCACTTCTGAGCCCTTGCTGTATATTTATCTGTATTATTACTATGCAAAGTTACGTATCCTGcctttttggttattttttacgAATCTTTCAAGATGTTAAATAGTTACACTGCTGTATTAACGTCTTAAGCATTTAATAGCATCCAAACACAAATTCCTTCTCAGGACGGATCCTGTCTATCCATATTGATCATCCAGTCCTTTGTCTTTATCAAAAATAAGTCCTAGTGGGCACTGCATTAATACGCTGCCGTTTATAT

Function

symbol description
sh3gl3b Predicted to enable lipid binding activity. Acts upstream of or within blood vessel lumenization. Predicted to be located in early endosome membrane. Is expressed in blood island; notochord; posterior lateral mesoderm; and vasculature. Orthologous to human SH3GL3 (SH3 domain containing GRB2 like 3, endophilin A3).

GO:

id name namespace
GO:0048514 blood vessel morphogenesis biological_process
GO:0072554 blood vessel lumenization biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040121-4 Predicted to enable lipid binding activity. Acts upstream of or within blood vessel lumenization. Predicted to be located in early endosome membrane. Is expressed in blood island; notochord; posterior lateral mesoderm; and vasculature. Orthologous to human SH3GL3 (SH3 domain containing GRB2 like 3, endophilin A3).

Ensembl:

ensembl_id ENSDARG00000007302

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047708 False 2161 mRNA 0.42 11 19522954 19536331
TCONS_00047709 False 2975 mRNA 0.40 10 19523099 19537323
TCONS_00047710 True 873 mRNA 0.43 5 19530017 19535811

Neighbor

gene id symbol gene type direction distance location
XLOC_024042 glsl coding upstream 1709 19485198 ~ 19521245 (+)
XLOC_024041 NA coding upstream 77442 19443951 ~ 19445512 (+)
XLOC_024040 NA coding upstream 160867 19356344 ~ 19362087 (+)
XLOC_024039 ppip5k1b coding upstream 175877 19238175 ~ 19347077 (+)
XLOC_024038 hapln3 coding upstream 317079 19201231 ~ 19205875 (+)
XLOC_024044 nedd1 coding downstream 3696 19541019 ~ 19556986 (+)
XLOC_024045 lyrm5b coding downstream 20305 19557628 ~ 19561261 (+)
XLOC_024046 zgc:171459 coding downstream 129298 19666621 ~ 19668179 (+)
XLOC_024047 zgc:113426 coding downstream 132950 19670273 ~ 19680133 (+)
XLOC_024048 si:dkeyp-110c12.3 coding downstream 143639 19680962 ~ 19693901 (+)
XLOC_023973 CR762411.1 misc upstream 4304845 15217824 ~ 15218109 (+)
XLOC_024031 NA non-coding upstream 598563 18920543 ~ 18924391 (+)
XLOC_024029 CR391963.2 non-coding upstream 637385 18884678 ~ 18885569 (+)
XLOC_024027 NA non-coding upstream 777925 18744021 ~ 18745029 (+)
XLOC_024053 CU041386.1 non-coding downstream 237236 19774559 ~ 19774675 (+)
XLOC_024057 NA non-coding downstream 449745 19987068 ~ 19998226 (+)
XLOC_024061 NA non-coding downstream 565942 20103265 ~ 20109429 (+)
XLOC_024066 CR846093.3 non-coding downstream 1055160 20592483 ~ 20592597 (+)
XLOC_024067 CR846093.2 non-coding downstream 1066573 20603896 ~ 20604012 (+)

Expression


Co-expression Network