G468096


Basic Information

Item Value
gene id G468096
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 5179612 ~ 5181167 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU531880
CTTTCCTagtatccaactgacattctagaatacaactgacattctagaatacaacggacagtctattatccaactgacattctagaatacaactgacattctagaatacaacggacagtctattatccaactgacattctagaatacaactgacattctagaatacaactgacattctagaatacaacggACAGTCTATTATCCAACTGACATGCTATTgcccaactgacattctagtatccaactgacattctagaatataactgacattctagaatacaacggacagtctattatccaactgacattctagaatacaacggacagtctattatccaactgacattctagaatacaacggacagtctattatccaactgacattctagaatacaacggacagtctattatccaactgacattctagaatacaactgaaAGTCTAttatacaactgacattctagaatacaacggacagtctattatccaactgacattctagaatacaactgacatgctagaatacaactgacattctagaatacaactggcattctagaatacaacggacagtctattatccaactgacattctagaatacaactggcattctagaatacaacggacagtctattatccaactgacattctagaatacaactgacattctagaatacaacggacagtctattatccaactgacattctagaatacaactggcattctagaatacaacggacagtctattatccaactgacattctagaatacaactgacattctagaatacaactgacattctagaatacaaccgacagtctattatccaactgacattctagaatacaactgacattctagaatacaacggACAGTCTATTATCTAACTGACATTCTAGAacacaactgacattctagaatacaacggACAGTCTattatccgactgacattctagaatacaactgacattctagaatacaactgacattctagaatacaactgacattctagaatacaaaaGACAGTCTATTATCCAACTGACATACTAGAATACAAccgacattctagaatacaactgacattctagaatacaactgacattctagtatccaactgacattctagaatacaatggacagtctattatccaactgacatactagaatacaactgacattctagaatacaactgacattctagaatacaaaagacagtctattatccaactgacatactagaatacaactgacattctagaatacaactgacattctagtatccaacTGTCATTCTAGAacacaactgacattctagaatacaacggacagtctattatccaactgacatactagaatacaactgacattctagaatacaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU531880 True 1385 lncRNA 0.35 3 5179612 5181167

Neighbor

gene id symbol gene type direction distance location
bmp2k LOC106585926 coding upstream 244163 4842875 ~ 4935449 (+)
LOC118964809 NA coding upstream 261521 4914866 ~ 4918091 (+)
LOC110525174 gpx8 coding upstream 387189 4790838 ~ 4792423 (+)
LOC110525169 LOC106585939 coding upstream 528741 4643954 ~ 4650871 (+)
LOC118964808 NA coding upstream 585422 4592804 ~ 4594190 (+)
prdm8b LOC106585925 coding downstream 398607 5579774 ~ 5585518 (+)
LOC118965066 LOC106585924 coding downstream 441933 5623100 ~ 5624315 (+)
LOC118964810 LOC106585924 coding downstream 476101 5657268 ~ 5658483 (+)
LOC110525066 LOC106585873 coding downstream 817659 5998826 ~ 6036553 (+)
LOC110510489 LOC106593421 coding downstream 879441 6060608 ~ 6147999 (+)
G468077 NA non-coding upstream 24777 5154504 ~ 5154835 (+)
G468076 NA non-coding upstream 25663 5153739 ~ 5153949 (+)
G468066 NA non-coding upstream 30074 5149071 ~ 5149538 (+)
G468033 NA non-coding upstream 71180 5108184 ~ 5108432 (+)
G468030 NA non-coding upstream 81028 5097347 ~ 5098584 (+)
G468102 NA non-coding downstream 8130 5189297 ~ 5189501 (+)
G468131 NA non-coding downstream 29250 5210417 ~ 5210639 (+)
G468139 NA non-coding downstream 33847 5215014 ~ 5215378 (+)
G468140 NA non-coding downstream 34326 5215493 ~ 5215702 (+)
G468165 NA non-coding downstream 57249 5238416 ~ 5238632 (+)
G466813 NA other upstream 1406272 3772864 ~ 3773340 (+)
G465578 NA other upstream 2197187 2978842 ~ 2982425 (+)
LOC110525071 LOC106585963 other upstream 2345502 2743964 ~ 2866482 (+)
zfr zfr other upstream 2770354 2342330 ~ 2451362 (+)
G468732 NA other downstream 927212 6108379 ~ 6156681 (+)
G468643 LOC106607869 other downstream 1013605 6194772 ~ 6199155 (+)
G468755 NA other downstream 1029032 6210199 ~ 6244501 (+)
G468768 NA other downstream 1073309 6254476 ~ 6371873 (+)
G468791 NA other downstream 1196472 6350096 ~ 6379704 (+)

Expression


Co-expression Network