XLOC_024044 (nedd1)


Basic Information

Item Value
gene id XLOC_024044
gene name nedd1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 19541019 ~ 19556986 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047711
TTGAGCCCAGCGGCGTGCCGTAGTGGCGGTTCCTCACCGGAGCCACGGATGTTCAAACTTTATCGATATGacaaagttttagttttaaataaaaggGCACATTTATTTAACCACAGTGGATGTATTGACAACTATATACCAGCATATCATTTACATTTTCTACACTTGTACAATCTAAAACAAGGCTGCTGGGATGGAGGACGTCACACGGCTGGTGTCGTCCGGTGACTGTCTGAAGATCTGGGACTCGAGCTCGATGACAGTGGTGGAGCAGTTTAATCCTCACAGTGCCACACATCCGGTGGCTCAAGTGTGCTGGAGCAGCAGCAATCAGTATGTGGTCAGTGCCAGCAGTATAGGAGACAAACTGGTTGTGTCCAGTCTCAAGTCCTCTCCTGTTCCAGTCATGGAGCTCGGTGAAGGGAAAAAACAAACCCGTGTGAGTCTGAACTCCACATCACAGTTTCTAGTCAGTGGTGGACTGGATAACACTGTTAATATCTGGGACCTCAAGACAAAACGACTGCACCGAACCCTTAAGGATCACAAGGAGGAGGTGACGTGCGTGTCTTTTAATGGAGGAGACAGCTACATCGCATCAGGCTCCACTAGCGGAGACATCATCCTCCACAGCATCACAACCAACCTGTCCAGCAAACCTTTCGGCCACGGGCCAAATGTGCCTATTCATGATCTGAGGTACTCTCTGGTGAAGCGCTCTCTGCTGGGCACGGTGTCTGACAGTGGATCTGTGGCCCTTTGGGATGCCAACACTCAGAAGGAGCTGCACTTGTTTGAGGGGGCGCACAAAGCCCCCTGTTCAGGACTGGCTTTCTCCCCGGCCAACGATTTACTCTTCGTTACTGTAGGCCTGGACAAGAAGATCGTCTGCTATGACACCTCAAGCAAAATAGTGTTTCGTAATAAGCAGGTGGAATCTCCACTCACAGCTATTGATTTTACTCCTGATGGAGCTGGACTGGTCGTGGGCTCAACGCAGGGCCGAATCTACCTGTATGACCTGAGAAACCTCAGCGCACCGGTCAAAATTAACACAGCTCACAAGACCTCAGTGACCTGCATTCGCTTCCAGAACTCCACCTCCAAGTTAAAGTCCACCAAATCATCCAGCAAGTCTTCTCAATCAAATAAAAGGATCTCAGTCAAGCTGGGCAGCAGTCAGCAGACGGGACCCTCCACCCCAACATCTACTGTCCCACCCATTGTTTCCGGATCTGAGTTTCCTGGAGATGGTCAAGCCCAAGTCCCAGGTCCATCTGCTGAGGTGTTTTCTCGAGAGGCAGAGGGTCAGCTCAGTCAAGATCAGATGCCCAATGTTGAGAAATTCAGCAGCATCGGACGAAATAGTTTAAACCTGGACATTTTCTCCCCTCTAAATGATGGTTTTAAATCACATGGCTTTGCTGATACTTCAAGAAATGGCGGCAGTATAGATGTTTTCTCGAGGGAAGCAGAAGGACAGCAGACCGCTGACCGCTTCAGAGTCGGCAGAAACAGCCTGGACATCTTTTCACCTGTACGAGACGATTACAAAGGGCACAGACTGAGTGATGTATCAAGTGGAAAGAAAGACTTTGAATATCTACCTCATTTCCCTGGAGGCTCATCCCAGAGGAAGACTCCATTGGGCACTCCTGGCAGCCGCTGCTACAGTCCGTCTGTGGTGCAGACTCCACCAATCAAAGAAGAGGAGTCCACCACTACCCCTCCACAGCAGACTGATGTCCAGAACGGCACCAAGGTGGAGAAGAGTAACGGTGTACGGCAGGAGTATGATGCCATCACCACACCGCCTGCAGCTCAGAGCACGCGAATTCAGTCCGTTCAGCCTCAGTTCAACACACCAGAGCCCAGTCAGAGGAGAGATCTTTCCACACAGCTCACATATGATTCCCCCATCAGCAGAGCTCCTGCttctcctgctgctgctgctgctgctgctgCCGCAGCAGTGGATTCTGCTCCACTCACTTCTGTACAGATGAACTTTGTCCGTAACATGATTCATGAGGCACTGGAGGACTTCAGAGACACGTGTCATCGAGACATCATCAATCTACAGGTGGAGATGGTTCGCCAGTTCTACATCCAGTTGAATGAAATCCACGGTCTGATTGAGAAATACTCCGTGAACGACTCGCTCGTCGAAGAGATCGAAAGACTGAAAGAGGAAAACAAAAGACTACGAGCCAACTATTAGAGCAGGCTCATGTGTCTGCCAGTGCCTTCACTCTGTTTGTCATATCGGCACACTTTTATATCCGCTTCAGCTCATGAAGAGTGTTTTTGTAAGATTTCTATGCCATAAAAACAGATGGAAATGAAAAGAACTCATTTTGTTTTCTCTCCAAGGTGTGCGTTGTACATCCTGACTAGTTTACTGAAAAACTACATGTATTGGCACTTAGGATGAGTAGAGTGAATAGACATCTCAGTGTGGATTTTGCAACCTATTTTTGCCACATGATTTTTGAAAACTGCATGCCAAAAATGAAGAAAGGACACTGGTGAACATAGATATGTTTGTATTTTCGCTTCAGAAGTGTGTGTGTAGGTCAGaagtgctcaaccctgttcctgtagatctaccttcctgcagagttcagctccagcccTGATCTACCctgaacacacctgaactaatcaattaggacctgaacagcacatGATAattgcaggcaggtgtgtttgatgtgggttgcaactgaaatctgctggaaggtagatctccaggaacagggttgagcactgCTGCTGTAGGTTCTATGAATGCAAGTGCTTTAATACACAACAAATAGTTGCAATCAGTTTTATACAATTTTGAAATGACTAACTCCAAACTATTGTCCTGTACACTGTGCTATTAATCCACATTTGTAAGACGTCTTCCTATGGActggcctaaataaattatttctgcAAATTTGTGTTTTCA
>TCONS_00047712
GAGCCCAGCGGCGTGCCGTAGTGGCGGTTCCTCACCGGAGCCACGGATGTTCAAACTTTATCGATATGacaaagttttagttttaaataaaaggGCACATTTATTTAACCACAGTGGATGTATTGACAACTATATACCAGCATATCATTTACATTTTCTACACTTGTACAATCTAAAACAAGGCTGCTGGGATGGAGGACGTCACACGGCTGGTGTCGTCCGGTGACTGTCTGAAGATCTGGGACTCGAGCTCGATGACAGTGGTGGAGCAGTTTAATCCTCACAGTGCCACACATCCGGTGGCTCAAGTGTGCTGGAGCAGCAGCAATCAGTATGTGGTCAGTGCCAGCAGTATAGGAGACAAACTGGTTGTGTCCAGTCTCAAGTCCTCTCCTGTTCCAGTCATGGAGCTCGGTGAAGGGAAAAAACAAACCCGTGTGAGTCTGAACTCCACATCACAGTTTCTAGTCAGTGGTGGACTGGATAACACTGTTAATATCTGGGACCTCAAGACAAAACGACTGCACCGAACCCTTAAGGATCACAAGGAGGAGGTGACGTGCGTGTCTTTTAATGGAGGAGACAGCTACATCGCATCAGGCTCCACTAGCGGAGACATCATCCTCCACAGCATCACAACCAACCTGTCCAGCAAACCTTTCGGCCACGGGCCAAATGTGCCTATTCATGATCTGAGGTACTCTCTGGTGAAGCGCTCTCTGCTGGGCACGGTGTCTGACAGTGGATCTGTGGCCCTTTGGGATGCCAACACTCAGAAGGAGCTGCACTTGTTTGAGGGGGCGCACAAAGCCCCCTGTTCAGGACTGGCTTTCTCCCCGGCCAACGATTTACTCTTCGTTACTGTAGGCCTGGACAAGAAGATCGTCTGCTATGACACCTCAAGCAAAATAGTGTTTCGTAATAAGCAGGTGGAATCTCCACTCACAGCTATTGATTTTACTCCTGATGGAGCTGGACTGGTCGTGGGCTCAACGCAGGGCCGAATCTACCTGTATGACCTGAGAAACCTCAGCGCACCGGTCAAAATTAACACAGCTCACAAGACCTCAGTGACCTGCATTCGCTTCCAGAACTCCACCTCCAAGTTAAAGTCCACCAAATCATCCAGCAAGTCTTCTCAATCAAATAAAAGGATCTCAGTCAAGCTGGGCAGCAGTCAGCAGACGGGACCCTCCACCCCAACATCTACTGTCCCACCCATTGTTTCCGGATCTGAGTTTCCTGGAGATGGTCAAGCCCAAGTCCCAGGTCCATCTGCTGAGGTGTTTTCTCGAGAGGCAGAGGGTCAGCTCAGTCAAGATCAGATGCCCAATGTTGAGAAATTCAGCAGCATCGGACGAAATAGTTTAAACCTGGACATTTTCTCCCCTCTAAATGATGGTTTTAAATCACATGGCTTTGCTGATACTTCAAGAAATGGCGGCAGTATAGATGTTTTCTCGAGGGAAGCAGAAGGACAGCAGACCGCTGACCGCTTCAGAGTCGGCAGAAACAGCCTGGACATCTTTTCACCTGTACGAGACGATTACAAAGGGCACAGACTGAGTGATGTATCAAGTGGAAAGAAAGACTTTGAATATCTACCTCATTTCCCTGGAGGCTCATCCCAGAGGAAGACTCCATTGGGCACTCCTGGCAGCCGCTGCTACAGTCCGTCTGTGGTGCAGACTCCACCAATCAAAGAAGAGGAGTCCACCACTACCCCTCCACAGCAGACTGATGTCCAGAACGGCACCAAGGTGGAGAAGAGTAACGGTGTACGGCAGGAGTATGATGCCATCACCACACCGCCTGCAGCTCAGAGCACGCGAATTCAGTCCGTTCAGCCTCAGTTCAACACACCAGAGCCCAGTCAGAGGAGAGATCTTTCCACACAGCTCACATATGATTCCCCCATCAGCAGAGCTCCTGCttctcctgctgctgctgctgctgctgctgCTCCAGCCGCAGCAGTGGATTCTGCTCCACTCACTTCTGTACAGATGAACTTTGTCCGTAACATGATTCATGAGGCACTGGAGGACTTCAGAGACACGTGTCATCGAGACATCATCAATCTACAGGTGGAGATGGTTCGCCAGTTCTACATCCAGTTGAATGAAATCCACGGTCTGATTGAGAAATACTCCGTGAACGACTCGCTCGTCGAAGAGATCGAAAGACTGAAAGAGGAAAACAAAAGACTACGAGCCAACTATTAGAGCAGGCTCATGTGTCTGCCAGTGCCTTCACTCTGTTTGTCATATCGGCACACTTTTATATCCGCTTCAGCTCATGAAGAGTGTTTTTGTAAGATTTCTATGCCATAAAAACAGATGGAAATGAAAAGAACTCATTTTGTTTTCTCTCCAAGGTGTGCGTTGTACATCCTGACTAGTTTACTGAAAAACTACATGTATTGGCACTTAGGATGAGTAGAGTGAATAGACATCTCAGTGTGGATTTTGCAACCTATTTTTGCCACATGATTTTTGAAAACTGCATGCCAAAAATGAAGAAAGGACACTGGTGAACATAGATATGTTTGTATTTTCGCTTCAGAAGTGTGTGTGTAGGTCAGaagtgctcaaccctgttcctgtagatctaccttcctgcagagttcagctccagcccTGATCTACCctgaacacacctgaactaatcaattaggacctgaacagcacatGATAattgcaggcaggtgtgtttgatgtgggttgcaactgaaatctgctggaaggtagatctccaggaacagggttgagcactgCTGCTGTAGGTTCTATGAATGCAAGTGCTTTAATACACAACAAATAGTTGCAATCAGTTTTATACAATTTTGAAATGACTAACTCCAAACTATTGTCCTGTACACTGTGCTATTAATCCACATTTGTAAGACGTCTTCCTATGGActggcctaaataaattatttctgc
>TCONS_00047713
CTTAGCTgaaaatattatatcatattgttattatttttttaaataatataaagtaaatttgcGAGCCTTTTCAAATTTAGTTAAAAGTCGTTAAATTCATTAAATAACATATTTACTAATAGTGTAATAGAATAGTATtaattggttagcactgttgcctcacaacaagaaggttgctggttcgagtcccggctgggtcaattggcatttctctgtggagtttgcatgttctcgctgtgttcgcgtaggtttcctttgatttcccccacagtctaaagacatgcgctgtgAATTAAACTGGCTGtagcatatgagtgtgtgtgtggattggagagcatatgggtgttttccagtactgggttgtcgCAGGAAGGATatccgctgtgtataacatatgctggaacaatTGTTGGTTCAGTTCGCTGTGGAAACATAAATTGAGTTGTTTCTCTGTGTTGTTGAAAGGTGGAGAAGAGTAACGGTGTACGGCAGGAGTATGATGCCATCACCACACCGCCTGCAGCTCAGAGCACGCGAATTCAGTCCGTTCAGCCTCAGTTCAACACACCAGAGCCCAGTCAGAGGAGAGATCTTTCCACACAGCTCACATATGATTCCCCCATCAGCAGAGCTCCTGCttctcctgctgctgctgctgctgctgctgCCGCAGCAGTGGATTCTGCTCCACTCACTTCTGTACAGATGAACTTTGTCCGTAACATGATTCATGAGGCACTGGAGGACTTCAGAGACACGTGTCATCGAGACATCATCAATCTACAGGTGGAGATGGTTCGCCAGTTCTACATCCAGTTGAATGAAATCCACGGTCTGATTGAGAAATACTCCGTGAACGACTCGCTCGTCGAAGAGATCGAAAGACTGAAAGAGGAAAACAAAAGACTACGAGCCAACTATTAGAGCAGGCTCATGTGTCTGCCAGTGC

Function

symbol description
nedd1 Acts upstream of or within protein localization to centrosome. Located in centrosome and cytoplasm. Is expressed in central nervous system; neural tube; optic cup; and solid lens vesicle. Orthologous to human NEDD1 (NEDD1 gamma-tubulin ring complex targeting factor).

GO:

id name namespace
GO:0071539 protein localization to centrosome biological_process
GO:0036064 ciliary basal body cellular_component
GO:0005813 centrosome cellular_component
GO:0005814 centriole cellular_component
GO:0000922 spindle pole cellular_component
GO:0000242 pericentriolar material cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-040426-2906 Acts upstream of or within protein localization to centrosome. Located in centrosome and cytoplasm. Is expressed in central nervous system; neural tube; optic cup; and solid lens vesicle. Orthologous to human NEDD1 (NEDD1 gamma-tubulin ring complex targeting factor).

Ensembl:

ensembl_id ENSDARG00000013472

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047711 False 2956 mRNA 0.48 17 19541019 19556986
TCONS_00047712 False 2945 mRNA 0.48 17 19541021 19556971
TCONS_00047713 True 949 lncRNA 0.44 4 19552326 19556276

Neighbor

gene id symbol gene type direction distance location
XLOC_024043 sh3gl3b coding upstream 3696 19522954 ~ 19537323 (+)
XLOC_024042 glsl coding upstream 19774 19485198 ~ 19521245 (+)
XLOC_024041 NA coding upstream 95507 19443951 ~ 19445512 (+)
XLOC_024040 NA coding upstream 178932 19356344 ~ 19362087 (+)
XLOC_024039 ppip5k1b coding upstream 193942 19238175 ~ 19347077 (+)
XLOC_024045 lyrm5b coding downstream 642 19557628 ~ 19561261 (+)
XLOC_024046 zgc:171459 coding downstream 109635 19666621 ~ 19668179 (+)
XLOC_024047 zgc:113426 coding downstream 113287 19670273 ~ 19680133 (+)
XLOC_024048 si:dkeyp-110c12.3 coding downstream 123976 19680962 ~ 19693901 (+)
XLOC_024049 mxg coding downstream 138666 19695652 ~ 19715136 (+)
XLOC_023973 CR762411.1 misc upstream 4322910 15217824 ~ 15218109 (+)
XLOC_024031 NA non-coding upstream 616628 18920543 ~ 18924391 (+)
XLOC_024029 CR391963.2 non-coding upstream 655450 18884678 ~ 18885569 (+)
XLOC_024027 NA non-coding upstream 795990 18744021 ~ 18745029 (+)
XLOC_024053 CU041386.1 non-coding downstream 217573 19774559 ~ 19774675 (+)
XLOC_024057 NA non-coding downstream 430082 19987068 ~ 19998226 (+)
XLOC_024061 NA non-coding downstream 546279 20103265 ~ 20109429 (+)
XLOC_024066 CR846093.3 non-coding downstream 1035497 20592483 ~ 20592597 (+)
XLOC_024067 CR846093.2 non-coding downstream 1046910 20603896 ~ 20604012 (+)

Expression


Co-expression Network