XLOC_024046 (zgc:171459)


Basic Information

Item Value
gene id XLOC_024046
gene name zgc:171459
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 19666621 ~ 19668179 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047715
AGGATGGAATGTTAAGAGAAGCACACTGCCAACGTGCACTATTAAGGGCCCTAGAAATCTGTTTTACGAAGTAATATAAAATATGGAATCAGCACCGACCACCTCCAAACTCATCTATAAAATGTCTGATGAGGACATCACAAAACTGATCCAGCTGCGATCCAGCAACTCAGCGCTTTTTGATGGGAGGAAAAATTCATCCAAAACAGCGTGGAGTGCAATACTCAGAGAAATGGGGCTTGACGAGAGGATGACAACAGAGCAGATGGCCAAAAAGTGGGAAAACCTGAAGGCGAGATATAAGGATGCAAGGTATCCCCCCTCTGGCGTTGAGAAGAACCCCACCTGCTGGAAATGGTTCAATCTCATGGATGATGCTTTGGGGAAAGAGTTTGATGATAAAATCAGCCAGCAAGTGATCGCATCAGAACCTGAAAATAATACAACACCTCATACGGGTAAGAGGTTACGACAGATTAAAGTCGGAGGTGAAATTTTGGAGTATCTGGAAGAGGAAGGATCATCAGTGAACATACCACCACCATCCAGAACACACAAACCAGGAACACAAAAGGGCAAGCAGCTCATAACAGAAGGTCATTCGCTGGATATCATGAGATCCAGACTTCAAAGAGAAAGACAGCTTTTAGAGAAGGAATTAGGGGGTCTAGACAGAGAAAAGGCCCTGTTGGAGCGGGAAAGGGCCCTTGCGGCACGAGAAAGAGCGGCTCTTCAGCGGGACAGAGTCCAGGTGGAGAAGGACAGAGCAGCGGTCAATAGAGACAAGGCATCACTGGAACAGGACAGAGCCCGACTGCAGAAAGACAGAGAAGCTTTGGTGAACGACAGAGCGGCCCTCGAAAGAAACAGAAGGTCGACGGATTTCACAAATCACGTGAAAAGCAGTTCAAGCTGCAATGGACTGGACTGTCCTCATGAGAAGAACAGAGAAAAGTTAATAATCTTACTCGAGAGGGTGATTGAAAAAATTTGAAGACAGAAACTGTCACAGGTCTAAAGTCTGAAGATACAGTTTAATGTGTCGTTTTtgtgtatattaaaataattgttgttacatatttttagtatttttcacTCCAGATTTGGTCACATTCGGTGAGTGGATTTTAATTGTTGCAAGCATCGACAGAATCCACATGGTcacttaaataaaatgtgtttcagACTTGTTTACTGCTGTATAAAGGCTGAAAGGTGGAGTGTTATTTGTGAATTAATGTAATATATCAGTGTCTGTATGTAAAGTGTACCTTTTTTGtcataaaataaatgtcaaaacacAA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2059 No description available

Ensembl:

ensembl_id ENSDARG00000077248

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047715 True 1304 mRNA 0.43 4 19666621 19668179

Neighbor

gene id symbol gene type direction distance location
XLOC_024045 lyrm5b coding upstream 105360 19557628 ~ 19561261 (+)
XLOC_024044 nedd1 coding upstream 109635 19541019 ~ 19556986 (+)
XLOC_024043 sh3gl3b coding upstream 129298 19522954 ~ 19537323 (+)
XLOC_024042 glsl coding upstream 145376 19485198 ~ 19521245 (+)
XLOC_024041 NA coding upstream 221109 19443951 ~ 19445512 (+)
XLOC_024047 zgc:113426 coding downstream 2094 19670273 ~ 19680133 (+)
XLOC_024048 si:dkeyp-110c12.3 coding downstream 12783 19680962 ~ 19693901 (+)
XLOC_024049 mxg coding downstream 27473 19695652 ~ 19715136 (+)
XLOC_024050 mxd coding downstream 50325 19718504 ~ 19731255 (+)
XLOC_024051 zgc:101783 coding downstream 65525 19733704 ~ 19752145 (+)
XLOC_023973 CR762411.1 misc upstream 4448512 15217824 ~ 15218109 (+)
XLOC_024040 NA non-coding upstream 304534 19356344 ~ 19362087 (+)
XLOC_024031 NA non-coding upstream 742230 18920543 ~ 18924391 (+)
XLOC_024029 CR391963.2 non-coding upstream 781052 18884678 ~ 18885569 (+)
XLOC_024027 NA non-coding upstream 921592 18744021 ~ 18745029 (+)
XLOC_024053 CU041386.1 non-coding downstream 106380 19774559 ~ 19774675 (+)
XLOC_024057 NA non-coding downstream 318889 19987068 ~ 19998226 (+)
XLOC_024061 NA non-coding downstream 435086 20103265 ~ 20109429 (+)
XLOC_024066 CR846093.3 non-coding downstream 924304 20592483 ~ 20592597 (+)
XLOC_024067 CR846093.2 non-coding downstream 935717 20603896 ~ 20604012 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000055_06143884_06145039 NA coding CI01000055 null 6142785 ~ 6145423 (+)