XLOC_024047 (zgc:113426)


Basic Information

Item Value
gene id XLOC_024047
gene name zgc:113426
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 19670273 ~ 19680133 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047716
AGAAACGGGAGAAGCTGTGAAGAAGTGCTGTCCGCGACACAGACCCTTGTTGAAGaagtgaaagaaaacaaaaacatggcATTACTGTCTCTATCATAAGAGGAGCTTGGCCACCTCTCactctctgtgtgtgtctttaaGAAATGGCTCAACCGTCTCAACAGTGGTCTCACAAGGACACAGAGACACTGATCAGATGGCGAATGGCCCACAGCTATTTATTCTCAGGCTGGAGAAACACATGCAGAAATGGCTGGGAGATGTTCATACAAGAGTCAATCCTAAACCTGGATGGAAATATTACTTCTCAAAGAGCAAAACGAAAGTGGGAGAATCTAAAATGCAAATACAAGGTCTTAAAAGCTCTTGCGAAGGATGTGGAAACGGTTAAACCTGAATCCTGGCGATGGTTCAGACTCATGGAAAAGGCTGTTGATGGTGACCCAGGAGACATCGACCCTCCTAAACCCACTTTATTATCTAACCTGGCTGACGAACCCGATTGTGCAGCCCAGCCCAGCAAGAAGATGTATCAGGTGGAAATGGGGAGTGATATTCTCGAATTACTAACACACTCCGTGATCGAAGTCAACACTCAAACAACAGTAGCTGATGTAGGACCCTCGTCAGACACAGCTGAAAGCGTGAAAGAGAAACAAATAGAAAAAAGCCCATCAGAGACTCAAGGCGAGCTACATTTGGAAAGAGCCAAACTCAGAAGAGAGCGACTGTTTCTAGAAAAGGAGCACGCGGACCTGGATCGAGAACGGTTGCTTCTGGAACGCGAAAAATCTGTCGCAGAAAGAGAGAAAACGGCGCTGGAAAGAGACAGAGCGCAGCTGGAAAAGGACAGAGCAGCGGTTGACAGAGAAAGAGCGTTCTTGGAACAGGACAGAGCGAGGCTTGAACGGGACAGGGCGGCTCttgaaagagacagagagacggTCAACGCCATGGTTCTTAGGACAAAGGGCACAGGACACACTGAAACAGACTCGCCATACGCAGAGGACAGAAAaagattaatatttttgtttgaaaaactcATTGAGAGATTTTGAGATCATTCTGATGCACTGAAAGAGGTCAGTGTTGATTATTTGGAGGGTATTTAAGATATTAAAGCACTTAAACAGATGTTCACTTTACACTTAAActgcagttcactcaaaaatgaacactCTATCTTTATTTAACACCCATTTACTAtcccatagtatttatttttccaattaTGCTGTAAATGGGTGGAgagatatttttgtttattgacatattttcatttgtgtttagcagaacatAGACATTGCTGCAGGTTAAAAAGAATTGtacatttttggtgaactgtccctttaagagaaaGCACTTCATGCATAAGTTTCCACTTTAAACGTTTTTGAGGATTCTCACATTTCCTGATGTAGTTCTCGAGTTCATTGTAGTTCACTACAAAGCataattgataataaataatgttcagttta
>TCONS_00047717
AAAGTACAGATGGCacaatttcttgtgcctgaatgctgtaaactcttgaaatgtttgtacagtcacaggccttaaaaatagatttccaattaaaaaaaaaaaaaaaaaaaaacttctggtcaactataaacccaactcaacattgcatatgctgCAATGTGACTATCGCAGATGCACACCTTTccatatcaatgctgaaacaatatgttgtgcagccctttgcttctgtatttttataaatgttgtattaaaaaaattaagaaaataacaaaatgtaaacaatgtaacAAGTAACATTACAATAAACAGATATAGGGATTTTCTTTTATTAAGTGCACACTTATATGAAcatactatttcttttttttcatgttagaaacatgtttaAACCTTAACCTGTGTTTTCTGCTTGCAGGATGTTCATACAAGAGTCAATCCTAAACCTGGATGGAAATATTACTTCTCAAAGAGCAAAACGAAAGTGGGAGAATCTAAAATGCAAATACAAGGTCTTAAAAGCTCTTGCGAAGGATGTGGAAACGGTTAAACCTGAATCCTGGCGATGGTTCAGACTCATGGAAAAGGCTGTTGATGGTGACCCAGGAGACATCGACCCTCCTAAACCCACTTTATTATCTAACCTGGCTGACGAACCCGATTGTGCAGCCCAGCCCAGCAAGAAGATGTATCAGGTGGAAATGGGGAGTGATATTCTCGAATTACTAACACACTCCGTGATCGAAGTCAACACTCAAACAACAGTAGCTGATGTAGGACCCTCGTCAGACACAGCTGAAAGCGTGAAAGAGAAACAAATAGAAAAAAGCCCATCAGAGACTCAAGGCGAGCTACATTTGGAAAGAGCCAAACTCAGAAGAGAGCGACTGTTTCTAGAAAAGGAGCACGCGGACCTGGATCGAGAACGGTTGCTTCTGGAACGCGAAAAATCTGTCGCAGAAAGAGAGAAAACGGCGCTGGAAAGAGACAGAGCGCAGCTGGAAAAGGACAGAGCAGCGGTTGACAGAGAAAGAGCGTTCTTGGAACAGGACAGAGCGAGGCTTGAACGGGACAGGGCGGCTCttgaaagagacagagagacggTCAACGCCATGGTTCTTAGGACAAAGGGCACAGGACACACTGAAACAGACTCGCCATACGCAGAGGACAGAAAaagattaatatttttgtttgaaaaactcATTGAGAGATTTTGAGATCATTCTGATGCACTGAAAGAGGTCAGTGTTGATTATTTGGAGGGTATTTAAGATATTAAAGCACTTAAACAGATGTTCACTTTACACTTAAActgcagttcactcaaaaatgaacactCTATCTTTATTTAACACCCATTTACTAtcccatagtatttatttttccaattaTGCTGTAAATGGGTGGAgagatatttttgtttattgacatattttcatttgtgtttagcagaacatAGACATTGCTGCAGGTTAAAAAGAATTGtacatttttggtgaactgtccctttaagagaaaGCACTTCATGCATAAGTTTCCACTTTAAACGTTTTTGAGGATTCTCACATTTCCTGATGTAGTTCTCGAGTTCATTGTAGTTCACTACAAAGCataattgataataaataatgttcagtttattCTCACAGGTTCTTGGCTGCAACAAGATTAaactttttgtctttttgttgaattgtttacattttatttggtattttggcttattttttttcttgtttatggaaGACCAATTAAAAGTAAGTAGTATTTTGATAAGCAGGTCAAATGCAGAACAAAAATCACTTTCCGCTTGTCATTATAAGGTTGCAAAAGATAAACTGAAAGAATCAattgacctttaaatgttttttaaaaaaattaaaactgcttttattctagctgaaataaaacaaatacaactttttccagaaggaaaaaaatgatcagacatactgtgaaaatttccttgctctgttaacatcatttgggaaatatatatatatatatcaaagggggactaataattctgacttcaactatataatgtacactcaaaaaactacataaaaaacaattcttgagtttttttttgggaACAACCTAATTATTTTATGCTCAATCTACTTAATGagtaaaaacaactaaatttggttgatttgtgttaggacgaTGTGAAGGCATTGTGTGGCACCCAGAATTATTTATAGTAAGCCACTATACCATGAAATAATAGTTCCTGCCTTGTATGTTTTAAGTTGAACCAAATTAACTTTACAAGTCATTTCAACTTATAATATATCTAATAAACTCAATTAAAACTTtaagttaaaattatttaaaatgtaaaaatacagtaaaacctgattaaattgttttaaaaagtcaaataCAAACATCTTGTCATGATCATATCATGTTTTACAGTGGagtttttttccattatttttgaacatttgaagtatataataaaatgcagcaccctcatttattagtttgctaatatGTTCAGGCAAGTATGTTGTATATGTATAAttttgacattgatatttgttcATATATTTGTTAGTTATTTGCGTGTGCTCTCTATCTACATGGGATCTGTCATTGAATTGAATTTGGACTAGTCATGCACAGTTACTAATTACATATATCGATACGAATGGGGATTTCACATGAAAGGTATACCCATGCAGATTTGTCATTTGTTTCAAGACGACCAAACAGAAAGCCCATTGCTTTAAAATGGGCTTCTGTGTGAATTTTACTTTACTACAACAGACCTTTTGTCCATAAAGATTTGCAGCTACTTAAATTTTATTAACCTCTGCTGCatgaaaaaatgttgttttgattgtGTTGCATTTTGACTAAACatctaaccttttttttttttttaaagaaaagtctaGTTACCTTTAATCAAGTTAACTTGAGTATTATTCAAGCAAAATTCTCAAATGgaagaaaatatttaaactttagCCATTTAAACAGAAGCAATTTTGTTCCACATCCTTGAAATCTTAGAATAACAAAACATGTTTTCctcctttaattaaaaaaattaccaaaagGCATTTTGCTGTCAACATAAATAGAATAAACATATGTTACAAAGGGTGCTGTGTTTTGGATGACCTTGGCAAGGGCCTGAGAAATAATTACATTCGGTCACATCAAAACCATAGGGACTGTTTTACatttaatgaacaatacatttattacagtaatatattcatctttatttatgaaaatgaagtcattcattgttagtcatcatttactcacagtTGCATAAACTAATGTTAGCACAACATGAggttttaataatgtattagtaaactttcaatcattttccttcggcttagtccttttattcatcagtggttaccacagaggaataaaccgccaacttatccagcatgttttttcacagcggatgcccttccagctgtaatccAGTActaaaaaacatccatacacactcattagcacgcatgcactacggccaattaagttcactcaattcacctatagcgtgcGTCTtcccacccagaggaaaccctcgctaacactgggagaacaagcaaactccacacggaaatgtcaactgacccagcagggactcaaaccagcgtgACAGGTGACAGACCTAACCAaagagccactgtgtcgcccacattagtaaaaaaataatgattgatAAATGCTATATAATTATATTTCGTTCTTATTAAATACATGAATTAACgtaacctttttgtaaagtgtgacctaaaaaaacagaaataaagtgtaaatcaagatttttttatgtaaaacatttACTGAAATGGCATGccaggtttgttttaaaacaaccAATGCAAATATCTGCTTCCTCATTTGTATTTTTAGAGACTCTTGTAGCTAACACACACAACATAGTGACCGTCTTTCAATAATTTGTGTATGCTCAATTTTTTTCCAGCCAAACTATAAAAACTCTTTTCTCAAATTTGAAATGCAAAGTCATAAAGAGGTCATCAAATGACAAAATTATGGGAACTACTACAGTAGTTCCCATAAAACATCTTGAGAAATGTTCAAGTATATTTGCCTCATGTTCTTCCTCTTTCTGTTAAATAACTGCACCGTCAAAGTGCTGACTGTTTTCTTTACTCTCTTCAGAACTGAATTACGTTTCAATGTTAAGTTCTTAAGGCTTccataaacaagacaaaataaaaaaatctagattGTAACAACCATTATAACTGATTATTGGTTTGTCAATGTCAACGGACATCAGGTCAAAACAGCTGTACTTCAAAAACAAGATACTgacataaaaatttaaaaataaaattatagaaATTGTTGATCCTTACTTGAAGTTTCTTCTGAAGGTTACGAACTTGAAAAATATAACAGTTGAACTTtcggtagcactttattttgatggtccctttaacgcattttgttgaatctaagttacattacatcaacatgccaactaattctctaGATTATAAGTAGGACTGTTTTAGattaagtttcttatagtcagttaaatgtgttgaaggagcagtatcagcagatattaagcagacagtctactaatgctcaaatggcaattaattggcatgtagttgaaAATGTGCAAtagaaaccatcaaaataaagtgttcccGAACTTTCAGGTTTTGCACATTGCACACTATAATCTATAGACACTCAAAAAAATTGtatacccaaaaataaaattctgtcatcatttacttatcttTGCCTTGCTTCAACTTTTAtaagtttctgt

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050913-149 No description available

Ensembl:

ensembl_id ENSDARG00000051793

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047716 False 1484 mRNA 0.42 4 19670273 19676975
TCONS_00047717 True 4798 mRNA 0.34 2 19673398 19680133

Neighbor

gene id symbol gene type direction distance location
XLOC_024046 zgc:171459 coding upstream 2094 19666621 ~ 19668179 (+)
XLOC_024045 lyrm5b coding upstream 109012 19557628 ~ 19561261 (+)
XLOC_024044 nedd1 coding upstream 113287 19541019 ~ 19556986 (+)
XLOC_024043 sh3gl3b coding upstream 132950 19522954 ~ 19537323 (+)
XLOC_024042 glsl coding upstream 149028 19485198 ~ 19521245 (+)
XLOC_024048 si:dkeyp-110c12.3 coding downstream 829 19680962 ~ 19693901 (+)
XLOC_024049 mxg coding downstream 15519 19695652 ~ 19715136 (+)
XLOC_024050 mxd coding downstream 38371 19718504 ~ 19731255 (+)
XLOC_024051 zgc:101783 coding downstream 53571 19733704 ~ 19752145 (+)
XLOC_024052 celsr1b coding downstream 73757 19753890 ~ 19869495 (+)
XLOC_023973 CR762411.1 misc upstream 4452164 15217824 ~ 15218109 (+)
XLOC_024041 NA non-coding upstream 224761 19443951 ~ 19445512 (+)
XLOC_024040 NA non-coding upstream 308186 19356344 ~ 19362087 (+)
XLOC_024031 NA non-coding upstream 745882 18920543 ~ 18924391 (+)
XLOC_024029 CR391963.2 non-coding upstream 784704 18884678 ~ 18885569 (+)
XLOC_024027 NA non-coding upstream 925244 18744021 ~ 18745029 (+)
XLOC_024053 CU041386.1 non-coding downstream 94426 19774559 ~ 19774675 (+)
XLOC_024057 NA non-coding downstream 306935 19987068 ~ 19998226 (+)
XLOC_024061 NA non-coding downstream 423132 20103265 ~ 20109429 (+)
XLOC_024066 CR846093.3 non-coding downstream 912350 20592483 ~ 20592597 (+)
XLOC_024067 CR846093.2 non-coding downstream 923763 20603896 ~ 20604012 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000055_06148933_06151962 NA coding CI01000055 null 6148684 ~ 6152205 (+)