G468791


Basic Information

Item Value
gene id G468791
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6350096 ~ 6379704 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU532820
cctaTCTTATGCTATGGGCCCCCTTACGTtcagcctggtgtgttctttggtaTGTCTGTCCTTATTAGGATTCGTAGACTATGTGTCTCTACTGACATTCCTTCAGCATCTCCATGTCCTAAAAATATGAGGCCTATTTCTATAGTCCATCagttggtcatttggctgaccccctcctttgtATATCCCTCTGACCTTGGTATGTCCAGCTGTCCTAGGCGCCTATGTGTCACCTTCTCTTCATGTGGTTATTTAAGATCAGCAGACTATGTGTCTCCATCTTTAGTGTGTCCAGTTGCCCTAGGCGCCtatgtgtttgtctatgtgtttTATTTGCTCCCACAATACCCATAGTGTTGATTCTGTGTTGATTGCTAGACCTTGCTGTTGGCTGCTGAGGGATGGGGTTTATGACTGTTTTCTGAATAGGTTTTGATGTCTTTGTTGTCGTTTGTTGTAAAACCCTTTGTAGTGGGATCTTTGGAACTGCACCTAATGCCGCAAACTCATCAGGTGATGGTTCAGGTTCCTCATAGACCTCAGGTTCCTGGTTctcaaaataagtgttcattccaTCTGGTTGGTTTAGTAAGTGGGCTGCCACAGCATGGGATTGAGAAGTTGACTCAACACTCTCCAGGACATTCAGTCTGACATTATATGCTGCTGTGTCTGTTTCCAGTTCCATTTTTCCATTCTAACATTCAGTTGATCTTTTCGAGGTGCAGAGGACACTGAGGATGACGCAGCCTTACAATACTTTGTTTTACTTGATGtttttgacacattggaaatgcTGTCATGTGGTTCAATGAGCGTTTGTGGCTCAAATACAGCATTTTTCCATATTTCCACCTCTTCAGGAAATGTTCTTAAGTCCTCATTCTTGGTTGATAATAGTTAATGCTCTCATGTTCCTGTTCCTCCTCTGTGACCAGCTCTAGTACAGATTCATCAGCATTCTGAAAGTCATGTTCCTGTTCCTCCTCTGTGACCAGCTCTAGTACAGATTCATCAGCATTCTGAAAGTCATTTCCTGTTCCGCCTCTGTGATCAGCTCTAGTACCGATTCATCAGCATTCTGAAAGTCATTTCCCTGTTCCTCCTCTGTGACCAGCTCTAGTACAGATTCATGAGCATTCTGAAAGTCATTTCCTTGTTCCTCCTCTGTGACCAGCTCTAGTACAGATTCATGAGCATTCTGAAAGTAATTTCCTGTTCCTCCTCTGTGACCAGCTCTAGTACAGATTCATGAGCATTCTGAAAGTCATTCAAGATGCTCTAGTAATATTTTACTAAATacATATACTGGGACATCTTTTAACACTTTCCTCACAGTAACACACATGTTCAGTCTATATTCGTCTTATGAAACCAATTATTTATTCATTTCTGCCCTGAAAAATCTGTTCAGTTCCTCCACATTGAAATGAATGGCGGCCAACTTGAAAATAGGCTGCTGTGACTGATTTTACACTGAATCCATGATGACTCTATGAAACCTTTCCAACGTGTCTCCTTGTTCTGTGGAGAGTTTGTTGTAGTTATCATCTATGGTACGATGTGATAACAAAGCACATCCCAATGCTGCCCATTCTGTCTCATCAATATACCCCAAAATGCATACAGGTATGACCTTTGACTCCCCAAGATGGACCCATGGAGATGTCATTAACATTCCAA
>TU532822
cctaTCTTATGCTATGGGCCCCCTTACGTtcagcctggtgtgttctttggtaTGTCTGTCCTTATTAGGATTCGTAGACTATGTGTCTCTACTGACATTCCTTCAGCATCTCCATGTCCTAAAAATATGAGGCCTATTTCTATAGTCCATCagttggtcatttggctgaCCCCCTTACGTtcagcctggtgtgttctttggtaTGTCTGTCCTTATTAGGATTCGTAGACTATGTGTCTCTACTGACATTCCTTCAGCATCTCCATGTCCTAAAAATATGAGGCCTATTTCTATAGTCCATCagttggtcatttggctgaccccctcctttgtATATCCCTCTGACCTTGGTATGTCCAGCTGTCCTAGGCGCCTATGTGTCACCTTCTCTTCATGTGGTTATTTAAGATCAGCAGACTATGTGTCTCCATCTTTAGTGTGTCCAGTTGCCCTAGGCGCCtatgtgtttgtctatgtgtttTATTTGCTCCCACAATACCCATAGTGTTGATTCTGTGTTGATTGCTAGACCTTGCTGTTGGCTGCTGAGGGATGGGGTTTATGACTGTTTTCTGAATAGGTTTTGATGTCTTTGTTGTCGTTTGTTGTAAAACCCTTTGTAGTGGGATCTTTGGAACTGCACCTAATGCCGCAAACTCAACAGGTGATGGTTCAGGTTCCTCATAGACCTCAGGTTCCTGGTTctcaaaataagtgttcattccaTCTGGTTGGTTTAGTAAGTGGGCTGCCACAGCATGGGATTGAGAAGTTGACTCAACACTCTCCAGGACATTCAGTCTGACATTATATGCTGCTGTGTCTGTTTCCAGTTCCATTTTTCCATTCTAACATTCAGTTGATCTTTTCGAGGTGCAGAGGACACTGAGGATGACGCAGCCTTACAATACTTTGTTTTACTTGATGtttttgacacattggaaatgcTGTCATGTGGTTCAATGAGCGTTTGTGGCTCAAATACAGCATTTTTCCATATTTCCACCTCTTCAGGAAATGTTCTTAAGTCCTCATTCTTGGTTGATAATAGTTAATGCTCTCATGTTCCTGTTCCTCCTCTGTGACCAGCTCTAGTACAGATTCATCAGCATTCTGAAAGTCATTTCCTGTTCCTCCTCTGTGACCAGCTCTAGTACAGATTCATGAGCATTCTGAAAGTAATTTCCTGTTCCTCCTCTGTGACCAGCTCTAGTACAGATTCATGAGCATTCTGAAAGTCATTCAAGATGCTCTAGTAATATTTTACTAAATacatatatca
>TU532823
cctaTCTTATGCTATGGGCCCCCTTACGTtcagcctggtgtgttctttggtaTGTCTGTCCTTATTAGGATTCGTAGACTATGTGTCTCTACTGACATTCCTTCAGCATCTCCATGTCCTAAAAATATGAGGCCTATTTCTATAGTCCATCagttggtcatttggctgaccccctcctttgtATATCCCTCTGACCTTGGTATGTCCAGCTGTCCTAGGCGCCTATGTGTCACCTTCTCTTCATGTGGTTATTTAAGATCAGCAGACTATGTGTCTCCATCTTTAGTGTGTCCAGTTGCCCTAGGCGCCtatgtgtttgtctatgtgtttTATTTGCTCCCACAATACCCATAGTGTTGATTCTGTGTTGATTGCTAGACCTTGCTGTTGGCTGCTGAGGGATGGGGTTTATGACTGTTTTCTGAATAGGTTTTGATGTCTTTGTTGTCGTTTGTTGTAAAACCCTTTGTAGTGGGATCTTTGGAACTGCACCTAATGCCGCAAACTCATCAGGTGATGGTTCAGGTTCCTCATAGACCTCAGGTTCCTGGTTctcaaaataagtgttcattccaTCTGGTTGGTTTAGTAAGTGGGCTGCCACAGCATGGGATTGAGAAGTTGACTCAACACTCTCCAGGACATTCAGTCTGACATTATATGCTGCTGTGTCTGTTTCCAGTTCCATTTTTCCATTCTAACATTCAGTTGATCTTTTCGAGGTGCAGAGGACACTGAGGATGACGCAGCCTTACAATACTTTGTTTTACTTGATGtttttgacacattggaaatgcTGTCATGTGGTTCAATGAGCGTTTGTGGCTCAAATACAGCATTTTTCCATATTTCCACCTCTTCAGGAAATGTTCTTAAGTCCTCATTCTTGGTTGATAATAGTTAATGCTCTCATGTTCCTGTTCCTCCTCTGTGACCAGCTCTAGTACAGATTCATCAGCATTCTGAAAGTCATTTCCTGTTCCGCCTCTGTGATCAGCTCTAGTACCGATTCATCAGCATTCTGAAAGTCATTTCCCTGTTCCTCCTCTGTGACCAGCTCTAGTACAGATTCATGAGCATTCTGAAAGTCATTTCCTTGTTCCTCCTCTGTGACCAGCTCTAGTACAGATTCATGAGCATTCTGAAAGTAATTTCCTGTTCCTCCTCTGTGACCAGCTCTAGTACAGATTCATGAGCATTCTGAAAGTCATGTTCCTGTTCCTCCTCTGTGACCAGCTCTAGTACAGATTCATCAGCATTCTGAAAGTCATTTCCTGTTCCTCCTCTGTGACCAGCTCTAGTACAGATTCATGAGCATTCTGAAAGTCATTCAAGATGCTCTAGTAATATTTTACTAAATacATATACTGGGACATCTTTTAACACTTTCCTCACAGTAACACACATGTTCAGTCTATATTCGTCTTATGAAACCAATTATTTATTCATTTCTGCCCTGAAAAATCTGTTCAGTTCCTCCACATTGAAATGAATGGCGGCCAACTTGAAAATAGGCTGCTGTGACTGATTTTACACTGAATCCATGATGACTCTATGAAACCTTTCCAACGTGTCTCCTTGTTCTGTGGAGAGTTTGTTGTAGTTATCATCTATGGTACGATGTGATAACAAAGCACATCCCAATGCTGCCCATTCTGTCTCATCAATATACCCCAAAATGCATACAGGTATGACCTTTGACTCCCCAAGATGGACCCATGGAGATGTCATTAACATTCCAA
>TU532824
cctaTCTTATGCTATGGGCCCCCTTACGTtcagcctggtgtgttctttggtaTGTCTGTCCTTATTAGGATTCGTAGACTATGTGTCTCTACTGACATTCCTTCAGCATCTCCATGTCCTAAAAATATGAGGCCTATTTCTATAGTCCATCagttggtcatttggctgaccccctcctttgtATATCCCTCTGACCTTGGTATGTCCAGCTGTCCTAGGCGCCTATGTGTCACCTTCTCTTCATGTGGTTATTTAAGATCAGCAGACTATGTGTCTCCATCTTTAGTGTGTCCAGTTGCCCTAGGCGCCtatgtgtttgtctatgtgtttTATTTGCTCCCACAATACCCATAGTGTTGATTCTGTGTTGATTGCTAGACCTTGCTGTTGGCTGCTGAGGGATGGGGTTTATGACTGTTTTCTGAATAGGTTTTGATGTCTTTGTTGTCGTTTGTTGTAAAACCCTTTGTAGTGGGATCTTTGGAACTGCACCTAATGCCGCAAACTCATCAGGTGATGGTTCAGGTTCCTCATAGACCTCAGGTTCCTGGTTctcaaaataagtgttcattccaTCTGGTTGGTTTAGTAAGTGGGCTGCCACAGCATGGGATTGAGAAGTTGACTCAACACTCTCCAGGACATTCAGTCTGACATTATATGCTGCTGTGTCTGTTTCCAGTTCCATTTTTCCATTCTAACATTCAGTTGATCTTTTCGAGGTGCAGAGGACACTGAGGATGACGCAGCCTTACAATACTTTGTTTTACTTGATGtttttgacacattggaaatgcTGTCATGTGGTTCAATGAGCGTTTGTGGCTCAAATACAGCATTTTTCCATATTTCCACCTCTTCAGGAAATGTTCTTAAGTCCTCATTCTTGGTTGATAATAGTTAATGCTCTCATGTTCCTGTTCCTCCTCTGTGACCAGCTCTAGTACAGATTCATCAGCATTCTGAAAGTCATTTCCTGTTCCTCCTCTGTGACCAGCTCTAGTACAGATTCATCAGCATTCTGAAAGTCATTTCCTGTTCCTCCTCTGTGACCAGCTCTAGTACAGATTCATGAGCATTCTGAAAGTCATTCAAGATGCTCTAGTAATATTTTACTAAATacATATACTGGGACATCTTTTAACACTTTCCTCACAGTAACACACATGTTCAGTCTATATTCGTCTTATGAAACCAATTATTTATTCATTTCTGCCCTGAAAAATCTGTTCAGTTCCTCCACATTGAAATGAATGGCGGCCAACTTGAAAATAGGCTGCTGTGACTGATTTTACACTGAATCCATGATGACTCTATGAAACCTTTCCAACGTGTCTCCTTGTTCTGTGGAGAGTTTGTTGTAGTTATCATCTATGGTACGATGTGATAACAAAGCACATCCCAATGCTGCCCATTCTGTCTCATCAATATACCCCAAAATGCATACAGGTATGACCTTTGACTCCCCAAGATGGACCCATGGAGATGTCATTAACATTCCAA
>TU532825
cctaTCTTATGCTATGGGCCCCCTTACGTtcagcctggtgtgttctttggtaTGTCTGTCCTTATTAGGATTCGTAGACTATGTGTCTCTACTGACATTCCTTCAGCATCTCCATGTCCTAAAAATATGAGGCCTATTTCTATAGTCCATCagttggtcatttggctgaccccctcctttgtATATCCCTCTGACCTTGGTATGTCCAGCTGTCCTAGGCGCCTATGTGTCACCTTCTCTTCATGTGGTTATTTAAGATCAGCAGACTATGTGTCTCCATCTTTAGTGTGTCCAGTTGCCCTAGGCGCCtatgtgtttgtctatgtgtttTATTTGCTCCCACAATACCCATAGTGTTGATTCTGTGTTGATTGCTAGACCTTGCTGTTGGCTGCTGAGGGATGGGGTTTATGACTGTTTTCTGAATAGGTTTTGATGTCTTTGTTGTCGTTTGTTGTAAAACCCTTTGTAGTGGGATCTTTGGAACTGCACCTAATGCCGCAAACTCATCAGGTGATGGTTCAGGTTCCTCATAGACCTCAGGTTCCTGGTTctcaaaataagtgttcattccaTCTGGTTGGTTTAGTAAGTGGGCTGCCACAGCATGGGATTGAGAAGTTGACTCAACACTCTCCAGGACATTCAGTCTGACATTATATGCTGCTGTGTCTGTTTCCAGTTCCATTTTTCCATTCTAACATTCAGTTGATCTTTTCGAGGTGCAGAGGACACTGAGGATGACGCAGCCTTACAATACTTTGTTTTACTTGATGtttttgacacattggaaatgcTGTCATGTGGTTCAATGAGCGTTTGTGGCTCAAATACAGCATTTTTCCATATTTCCACCTCTTCAGGAAATGTTCTTAAGTCCTCATTCTTGGTTGATAATAGTTAATGCTCTCATGTTCCTGTTCCTCCTCTGTGACCAGCTCTAGTACAGATTCATCAGCATTCTGAAAGTCATTTTCCTGTTCCTCCTCTGTGACCAGCTCTAGTACAGATTCATGAGCATTCTGAAAGTCATTTCCTGTTCCTCCTCTGTGACCAGCTCTAGTACAGATTCATCAGCATTCTGAAAGTCATTTCCTGTTCCTCCTCTGTGACCAGCTCTAGTACAGATTCATGAGCATTCTGAAAGTCATTCAAGATGCTCTAGTAATATTTTACTAAATacatatatca
>TU532821
cggtgagtgaatgaggacccaaaagcgaactaacttaaacagagcttctttaataaccaaacataggtaggctcagatagaccggcagattccgacaggacaggacaaggttacagcaaacatgacgatagtctggctcaggcatgaaacacaacaaacaagaatccgacaacgacaggagcagaaacagagagagatatagggacctaatcagagggaaaaagggaacaggtgggaaaaggggtaacgaggtggttaggaggagacaaggcacagctgggggaaagatggggagaaaaggtaacctaacaacgaccagcagagggagacagggtgaagggaaaggacagagacaagacacaacatgacagtacatgacacctaTCTTATGCTATGGGCCCCCTTACGTtcagcctggtgtgttctttggtaTGTCTGTCCTTATTAGGATTCGTAGACTATGTGTCTCTACTGACATTCCTTCAGCATCTCCATGTCCTAAAAATATGAGGCCTATTTCTATAGTCCATCagttggtcatttggctgaccccctcctttgtATATCCCTCTGACCTTGGTATGTCCAGCTGTCCTAGGCGCCTATGTGTCACCTTCTCTTCATGTGGTTATTTAAGATCAGCAGACTATGTGTCTCCATCTTTAGTGTGTCCAGTTGCCCTAGGCGCCtatgtgtttgtctatgtgtttTATTTGCTCCCACAATACCCATAGTGTTGATTCTGTGTTGATTGCTAGACCTTGCTGTTGGCTGCTGAGGGATGGGGTTTATGACTGTTTTCTGAATAGGTTTTGATGTCTTTGTTGTCGTTTGTTGTAAAACCCTTTGTAGTGGGATCTTTGGAACTGCACCTAATGCCGCAAACTCAACAGGTGATGGTTCAGGTTCCTCATAGACCTCAGGTTCCTGGTTctcaaaataagtgttcattccaTCTGGTTGGTTTAGTAAGTGGGCTGCCACAGCATGGGATTGAGAAGTTGACTCAACACTCTCCAGGACATTCAGTCTGACATTATATGCTGCTGTGTCTGTTTCCAGTTCCATTTTTCCATTCTAACATTCAGTTGATCTTTTCGAGGTGCAGAGGACACTGAGGATGACGCAGCCTTACAATACTTTGTTTTACTTGATGtttttgacacattggaaatgcTGTCATGTGGTTCAATGAGCGTTTGTGGCTCAAATACAGCATTTTTCCATATTTCCACCTCTTCAGGAAATGTTCTTAAGTCCTCATTCTTGGTTGATAATAGTTAATGCTCTCATGTTCCTGTTCCTCCTCTGTGACCAGCTCTAGTACAGATTCATCAGCATTCTGAAAGTCATTTCCTGTTCCTCCTCTGTGACCAGCTCTAGTACAGATTCATGAGCATTCTGAAAGTCATTTCCTTGTTCCTCCTCTGTGACCAGCTCTAGTACAGATTCATGAGCATTCTGAAAGTAATTTCCTGTTCCTCCTCTGTGACCAGCTCTAGTACAGATTCATGAGCATTCTGAAAGTCATTCAAGATGCTCTAGTAATATTTTACTAAATacatatatca

Function

NR:

description
PREDICTED: uncharacterized protein LOC106593859

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU532820 False 1683 lncRNA 0.42 3 6350096 6379704
TU532822 False 1282 lncRNA 0.42 3 6350096 6379269
TU532823 False 1742 lncRNA 0.42 4 6350096 6379704
TU532824 False 1503 lncRNA 0.42 4 6350096 6379704
TU532825 False 1191 lncRNA 0.42 4 6350096 6379269
TU532821 True 1571 TUCP 0.44 2 6377639 6379269

Neighbor

gene id symbol gene type direction distance location
LOC110510500 LOC106607873 coding upstream 118696 6224254 ~ 6231849 (+)
LOC118964813 NA coding upstream 176685 6166943 ~ 6173411 (+)
LOC110510489 LOC106593421 coding upstream 202097 6060608 ~ 6147999 (+)
LOC118964812 LOC106607869 coding upstream 261373 6078177 ~ 6088723 (+)
LOC110525066 LOC106585873 coding upstream 313543 5998826 ~ 6036553 (+)
LOC110518225 LOC106607873 coding downstream 43437 6423141 ~ 6428139 (+)
LOC118964815 LOC106607873 coding downstream 102308 6482012 ~ 6488606 (+)
LOC110525188 NA coding downstream 229217 6608921 ~ 6609844 (+)
ydjc ydjc coding downstream 303203 6682907 ~ 6692547 (+)
ccl19a.2 LOC106585882 coding downstream 331190 6710688 ~ 6713091 (+)
G468662 NA non-coding upstream 4872 6343996 ~ 6345224 (+)
G468647 LOC106607872 non-coding upstream 16237 6302128 ~ 6333859 (+)
G468785 NA non-coding upstream 33729 6293208 ~ 6316367 (+)
G468770 NA non-coding upstream 88617 6257968 ~ 6261479 (+)
G468660 NA non-coding upstream 107315 6202078 ~ 6242781 (+)
G468795 NA non-coding downstream 2865 6382569 ~ 6386729 (+)
G468796 NA non-coding downstream 11279 6390983 ~ 6391254 (+)
G468636 NA non-coding downstream 23197 6402901 ~ 6447019 (+)
G468641 NA non-coding downstream 28690 6408394 ~ 6466268 (+)
G468765 LOC106607873 non-coding downstream 48593 6423414 ~ 6488418 (+)
G468768 NA other upstream 6481 6254476 ~ 6371873 (+)
G468755 NA other upstream 105595 6210199 ~ 6244501 (+)
G468643 LOC106607869 other upstream 150941 6194772 ~ 6199155 (+)
G468732 NA other upstream 193415 6108379 ~ 6156681 (+)
G466813 NA other upstream 2576756 3772864 ~ 3773340 (+)
G468841 LOC106590901 other downstream 171273 6550977 ~ 6557058 (+)
G468887 sdf2l other downstream 292804 6672508 ~ 6674387 (+)
ccl19a.1 LOC106585878 other downstream 340221 6719880 ~ 6741493 (+)
G468794 NA non-coding upstream 4587 6372143 ~ 6373052 (+)
G468769 NA non-coding upstream 9188 6338339 ~ 6368451 (+)
G468789 NA non-coding upstream 11749 6336953 ~ 6365890 (+)
G468653 NA non-coding upstream 14300 6251178 ~ 6363339 (+)

Expression


Co-expression Network