XLOC_024055 (kcna6a)


Basic Information

Item Value
gene id XLOC_024055
gene name kcna6a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 19947096 ~ 19951331 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047736
ATCTGTTTGAGCTCTCGGCTGACCATGCTGCCAGAATGACTTCTGTTACTTTGAACCAATAAACCAGTGTTAAATACAGTCTTAAGACGTTTTGGAAGGTGGTACAGTTTTAGAAATTAGTATAGGACTCTATCTTAGCCAGGCTGGAGCTCTCAGATCCTAAAAACTGGTGGAGTGGTAGCAAGTCGAGGAGGCACAAGCAGCACTCCTCTCGAGGGGCTAAAATGTCCCGAGAGAACCAGGATGATGGTGTGGACCATGTTGCCCTCTTACAGGACATCTGTGAAATGGAACAGTCTGACCAGGAGTGCTGCGAGCTAGTCACCATCAACATATCAGGTCTGCGCTTCGAAACGCAACTTAAAACGCTTGCGAGGTACCCGAACACATTGTTAGGAGACCCCATTAAAAGGATGAGGTTCTTCGACCCACTGAGGAATGAGTTCTTCTTCGACAGGAACAGACCGAGCTTTGATGCGATCCTGTATTATTACCAATCAGGCGGAAGACTTCGAAGACCCATCAACGTGCCAGTTGACATGTTCCTAGATGAAATCAAATTTTACGAGATTGGTGATGATGTCATCAAACATTTTCAAGAGGATGAAGGTTTGCTGAAAGAAGACGAACGTCCCTTGCCATCCAATGAGTTTAAGCGTCAAATCTGGCTGTTGTTTGAGCATCCTGACAGCTCGGGTGCAGCTAGAATTATTGCTATCGTTTCAGTAATGGTCATCCTGATATCCATTATAATCTTCTGTATAGAAACTTTGCCAGAGTTTAGAGAAGATGATCGGGTGTTCGATAATCACCTTCCGGCAAACAGTACAACTTCTGTACAAAGATTAAGCGCATACACGGACCCATTCTTCTTATTGGAGACTATTTGTATTGTTTGGTTTTGCTTTGAGCTGTTTATAAGGTTTCTTGCTTGCCCAAGCAAGCCCACCTTCTTCAAAGACATCATGAACACCATAGACATTGTTGCCATTATGCCATATTTCATTACTCTGAGTTTAGAACTTGGTGAGGTGCAGTCAAACCAACAACAGACCACATCTCTCGCCATACTGAGAGTCATCCGCTTGGTACGCGTCTTTAGGATATTCAAACTTTCAAGGCACTCCAAGGGTCTGCAGATTCTTGGTCAGACCCTACGAGCAAGCATGCGAGAACTCGGACTACTGATTTTTTTCCTCATCATCGGCATTATATTGTTCTCCAGTGCAGTTTACTTCGCCGAAGCGGATGACCCAGAAACTTCTTTTACTAGTATCCCTGATGCATTCTGGTGGGCAGTTGTTTCAATGACTACTGTTGGATATGGTGACATGTACCCGGTCACAATTGGGGGCAAAATTGTTGGATCAATGTGTGCCATAGCAGGAGTTCTTACCATTGCCCTTCCTGTACCAGTAATCGTGTcgaattttaattacttttatcaCAGAGAGCACAACGAGGCGGATCAAGTGGAATATACACATGTAACCTGTGGCCGCTCGCTGCCTATGCAGTGTGACAGAAATAAAAGTGACAGTAAATCCTCTCTCATGATATCAGAGCATTCAAATGATGATGCCTGTACAATATCAAGCATATTAAATTTCGGGCCATCAGAGGACTACACGGGCAAACTCACAGACGTATAAGAAAACCACCTGTACCAAAACATGGCTCCATGTTGCAGCAGAAGTATGAAGAATTTTCTTCTCTAAAGAAGACAGAAGTTACTTTTACCTTTGTAAACATCCGCTGTCTGCATTGTAAGTGTTTTTAAAGTCATATGTAGGCTGAGTATTGAAAGCGAGCTTAAATGAAGCATATAGGCCAGGTAACGTTTAAAACGTACAAATTGATATGTATAATGTTTATAATGTAAATATCTTGCGATCAATTTGGCAAAACCAGTGTATGTTAATCGATGAAGGAGGCTGATGGAATGATGACAAACGCTTTGCTATTATTAACTGACGAATCCGACATTTACGTAAGtcaatgaaaaaaacatttttaaaccaaTCAGCTTTCAATATCACGTTATTACATTCAAATGTAGCCTTTTTCAGTCAATTTAAATGCATCAAGTTATCATTTGTTTACGTAATACATATAATTGTCGGTTCCGCAATCAATATCAGCCTACATATAGGCTATTTACAATCCTCACCGGCAGATTTgagatttttttgtaatatattgtaatatatttgtaactgaatgtttataaattaattacGTTTTATTTAAGCCATCACTGTGTCACTGTCTTTATGAAATATTGCTCTTAAAATATCTAAATGATTTCTGTCTTGTGTAAGCTGCTTTTTGAATATGTTGCCTTTCCTCAGGATATTTTTTAATGGTTTGACATTAGATCtttgttaacatgttttgacttGTTAACTGTTCACATGACAGCATGAGACCAATTCagtgaacagttttttttaacttgttaTTTAATGAGATTTAAATTGTTAacttatttttgataaataaatgtGGTCACATTCATAAACTATCCTAGTTTGAACCCCT
>TCONS_00047737
GCACTCCTCTCGAGGGGCTAAAATGTCCCGAGAGAACCAGGATGATGGTGTGGACCATGTTGCCCTCTTACAGGACATCTGTGAAATGGAACAGTCTGACCAGGAGTGCTGCGAGCTAGTCACCATCAACATATCAGGTCTGCGCTTCGAAACGCAACTTAAAACGCTTGCGAGGTACCCGAACACATTGTTAGGAGACCCCATTAAAAGGATGAGGTTCTTCGACCCACTGAGGAATGAGTTCTTCTTCGACAGGAACAGACCGAGCTTTGATGCGATCCTGTATTATTACCAATCAGGCGGAAGACTTCGAAGACCCATCAACGTGCCAGTTGACATGTTCCTAGATGAAATCAAATTTTACGAGATTGGTGATGATGTCATCAAACATTTTCAAGAGGATGAAGGTTTGCTGAAAGAAGACGAACGTCCCTTGCCATCCAATGAGTTTAAGCGTCAAATCTGGCTGTTGTTTGAGCATCCTGACAGCTCGGGTGCAGCTAGAATTATTGCTATCGTTTCAGTAATGGTCATCCTGATATCCATTATAATCTTCTGTATAGAAACTTTGCCAGAGTTTAGAGAAGATGATCGGGTGTTCGATAATCACCTTCCGGCAAACAGTACAACTTCTGTACAAAGATTAAGCGCATACACGGACCCATTCTTCTTATTGGAGACTATTTGTATTGTTTGGTTTTGCTTTGAGCTGTTTATAAGGTTTCTTGCTTGCCCAAGCAAGCCCACCTTCTTCAAAGACATCATGAACACCATAGACATTGTTGCCATTATGCCATATTTCATTACTCTGAGTTTAGAACTTGGTGAGGTGCAGTCAAACCAACAACAGACCACATCTCTCGCCATACTGAGAGTCATCCGCTTGGTACGCGTCTTTAGGATATTCAAACTTTCAAGGCACTCCAAGGGTCTGCAGATTCTTGGTCAGACCCTACGAGCAAGCATGCGAGAACTCGGACTACTGATTTTTTTCCTCATCATCGGCATTATATTGTTCTCCAGTGCAGTTTACTTCGCCGAAGCGGATGACCCAGAAACTTCTTTTACTAGTATCCCTGATGCATTCTGGTGGGCAGTTGTTTCAATGACTACTGTTGGATATGGTGACATGTACCCGGTCACAATTGGGGGCAAAATTGTTGGATCAATGTGTGCCATAGCAGGAGTTCTTACCATTGCCCTTCCTGTACCAGTAATCGTGTcgaattttaattacttttatcaCAGAGAGCACAACGAGGCGGATCAAGTGGAATATACACATGTAACCTGTGGCCGCTCGCTGCCTATGCAGTGTGACAGAAATAAAAGTGACAGTAAATCCTCTCTCATGATATCAGAGCATTCAAATGATGATGCCTGTACAATATCAAGCATATTAAATTTCGGGCCATCAGAGGACTACACGGGCAAACTCACAGACGTATAAGAAAACCACCTGTACCAAAA

Function

symbol description
kcna6a Predicted to enable delayed rectifier potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be integral component of membrane. Orthologous to human KCNA6 (potassium voltage-gated channel subfamily A member 6).

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005216 ion channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function
GO:0005249 voltage-gated potassium channel activity molecular_function
GO:0005251 delayed rectifier potassium channel activity molecular_function
GO:0005267 potassium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080722-21 Predicted to enable delayed rectifier potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be integral component of membrane. Orthologous to human KCNA6 (potassium voltage-gated channel subfamily A member 6).

Ensembl:

ensembl_id ENSDARG00000046014

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047736 False 2541 mRNA 0.40 2 19947096 19951331
TCONS_00047737 True 1470 mRNA 0.44 1 19947298 19948767

Neighbor

gene id symbol gene type direction distance location
XLOC_024054 gramd4b coding upstream 10498 19870603 ~ 19936598 (+)
XLOC_024052 celsr1b coding upstream 77601 19753890 ~ 19869495 (+)
XLOC_024053 CU041386.1 coding upstream 172421 19774559 ~ 19774675 (+)
XLOC_024051 zgc:101783 coding upstream 194951 19733704 ~ 19752145 (+)
XLOC_024050 mxd coding upstream 215841 19718504 ~ 19731255 (+)
XLOC_024056 kcna1a coding downstream 3245 19954576 ~ 19958278 (+)
XLOC_024057 NA coding downstream 35737 19987068 ~ 19998226 (+)
XLOC_024058 zgc:194665 coding downstream 48292 19999623 ~ 20003528 (+)
XLOC_024059 tnni4b.1 coding downstream 125894 20077225 ~ 20087924 (+)
XLOC_024060 tnni4b.2 coding downstream 138655 20089986 ~ 20099773 (+)
XLOC_023973 CR762411.1 misc upstream 4728987 15217824 ~ 15218109 (+)
XLOC_024041 NA non-coding upstream 501584 19443951 ~ 19445512 (+)
XLOC_024040 NA non-coding upstream 585009 19356344 ~ 19362087 (+)
XLOC_024031 NA non-coding upstream 1022705 18920543 ~ 18924391 (+)
XLOC_024029 CR391963.2 non-coding upstream 1061527 18884678 ~ 18885569 (+)
XLOC_024061 NA non-coding downstream 151934 20103265 ~ 20109429 (+)
XLOC_024066 CR846093.3 non-coding downstream 641152 20592483 ~ 20592597 (+)
XLOC_024067 CR846093.2 non-coding downstream 652565 20603896 ~ 20604012 (+)
XLOC_024070 NA non-coding downstream 901869 20853200 ~ 20870875 (+)

Expression


Co-expression Network