G468639


Basic Information

Item Value
gene id G468639
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6501918 ~ 6504478 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU532619
TGCTGTGTCTCCTCCTGACTGGGAGTATGGAACCTGTATCTGACGTCTCTCCATGTTCTAGAATAATAGAACAACCATTTAGAATGGGACCATTTACCTCAGTGACACATGAAGGCACATAGACCTACTGAAGGGGAGTTCTGGGTTTCTCCTGAAATGTTAAGTATCACATATCTCACTCACCAGTCATCTGGGCTGAGATctctcttctcagtctctctacctcagtCTTCACATCACATATCTGTTGAGCTGAAATAACAAAGGAGGACTAGGATCTGAATTCTGTGTTAAAGACTTTAGACAGAAATATGATGCAGAGGGAAAGTATGAAGTGATGGACAACAATATTCACAACTCAGTGGAGAGTCGACAATAACCTGAGAATTGAGGAAAGTACAGAAGACTAAATGTATTAATGGTGTGAATAATCTCACCCAGTTCAGCATTTTCATTGTTGACATCCTCCacctgtttgtctctctcctttaactgcttctctctctcctctagtagGTTGTCTTTCTCTTCtacttcctgtctcctctcttctacttcctgtctcctctcttctacttcctgtctcctctcttttaGTTCATTTTCTTTTCCCTccagtagtctgtctctctcttccagtagtttctctctctcttccagtactttgtctctgtcttccagtagtctgtccttctctcccagtCTGTGGTTCCTGTCCTCTAGTTGAATGTCTCTATCCTTTAGTTGTTTGACTCTCTCTTCTAGtagtctgtccttctctcccagtCTGTGGTTCCTGTCCTCTAGTTGAAGGTCTTTTTCCTGCAGTAGGACTCTGAAGTTCTCTACTTGGCTGTTCTTGTCCTGCAGGTTCTTTATCAGAGCCTCTAGTTGAATGTCTCTATCCTTTAGTTGCTTGTCTTTCTCTTCCAGTTGCTTGTCTTTCTCTTCTAATAGTTTCTCCCTCTGTTCCATTATCTGGTTCTTCTCCTCCAggagtctctctttctttctcacttccTGGGTCATATCATCCagttgtgtgtctttctctctcacttcctggGTCATATCATCCAGTTGTTTGTCTTTCTCCTCTAGTTGATTCATCATCTCTTTAAACATCTTCAACTCTGAGAGCAATTAACATATTTAATTGGTTGCTTGAATAAGTAATGTATTAATTAATTCAATAGTATGTCTATAAAGACATTATCATTTGATGGAGGTGGTACAATTATTAGTAATTATTTCCTCCAGTCAACAGTTATCTGAGCTGAACCAATCATCAACTGGTCTATTGACTATTTGATACATTATAAATGAATTAGTCTGAAAAACTGAATGACATCACTCATGTTCCCTGATtcaatcctctctcctccagactCTCTCATACTTACCAAGCTCACCAGCTGATGCCTCCCTCTTCAGCTTGATCTCCTGGGTCTCACGTTGTAAATACCGTGATCCTGAGTCTATGGTGTAAAACAGAGAGGTGAGTTCTGTGTGGTAGACGACATCACTATATACAGAAGAAACAGGACCAATCAGATTTCTCCTGTCACTCAAGCCTAGTTTGTGATAACCAGCATTGGGCTCTATGTCAGATACAGGATATTGTGTCAGGAGGCAGGGTTCTATGGAATATACATTCAGTAGAATGTGAAGAACATATGACATCATAATACAACCTACCTTGAGAACATTTGGGGAGAGTTTTGATAAATGTAAAGAAACTGATTCCATGTTCATTTTGGAGTGTGAAATGTTGTtctctatggcagatatatagtgggaggactatgtgaaatattgacctctatagcagatatatagtgggaggactatgtgaaatattgacctcaatgtcagatatattgtgggaggactatgtgaaatattgacctctatgacAGATATATAGTgtgaggactatgtgaaatattgacctctatagcagatatatagtgggaggactatgtgaaatattgacctctatggcagatatattgtgaaagggaaaggaaagggggatacctagtcagttgtccaactgaatgtattcaactgagatgtgtcttccgcatttaactcaacccctctaAAATGTTGACCTCCATagcagatatattgtgggagaactatgtgaaatgt

Function

NR:

description
trichohyalin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU532619 True 2157 lncRNA 0.40 2 6501918 6504478

Neighbor

gene id symbol gene type direction distance location
LOC118964815 LOC106607873 coding upstream 13312 6482012 ~ 6488606 (+)
LOC110518225 LOC106607873 coding upstream 73779 6423141 ~ 6428139 (+)
LOC110510500 LOC106607873 coding upstream 270518 6224254 ~ 6231849 (+)
LOC118964813 NA coding upstream 328507 6166943 ~ 6173411 (+)
LOC118964812 LOC106607869 coding upstream 413195 6078177 ~ 6088723 (+)
LOC110525188 NA coding downstream 104443 6608921 ~ 6609844 (+)
ydjc ydjc coding downstream 178429 6682907 ~ 6692547 (+)
ccl19a.2 LOC106585882 coding downstream 206416 6710688 ~ 6713091 (+)
ccl19a.1 LOC106585878 coding downstream 215402 6719880 ~ 6741493 (+)
LOC110525076 LOC106570860 coding downstream 246503 6750981 ~ 6771402 (+)
G468820 NA non-coding upstream 6234 6494938 ~ 6495684 (+)
G468765 LOC106607873 non-coding upstream 13500 6423414 ~ 6488418 (+)
G468641 NA non-coding upstream 35650 6408394 ~ 6466268 (+)
G468636 NA non-coding upstream 54899 6402901 ~ 6447019 (+)
G468802 NA non-coding upstream 70129 6430148 ~ 6431789 (+)
G468822 NA non-coding downstream 3424 6507902 ~ 6523525 (+)
G468841 LOC106590901 non-coding downstream 46499 6550977 ~ 6557058 (+)
G468855 top3b non-coding downstream 88546 6593024 ~ 6593649 (+)
G468875 NA non-coding downstream 144206 6648684 ~ 6649239 (+)
G468878 NA non-coding downstream 153931 6658409 ~ 6708164 (+)
G468791 NA other upstream 122649 6350096 ~ 6379704 (+)
G468768 NA other upstream 158303 6254476 ~ 6371873 (+)
G468755 NA other upstream 257417 6210199 ~ 6244501 (+)
G468643 LOC106607869 other upstream 302763 6194772 ~ 6199155 (+)
G468887 sdf2l other downstream 168030 6672508 ~ 6674387 (+)
G469048 NA other downstream 847708 7352186 ~ 7352578 (+)

Expression


Co-expression Network