G468855 (top3b)


Basic Information

Item Value
gene id G468855
gene name top3b
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6593024 ~ 6593649 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU532930
TTAAAAGTTAGTACTGACCTGTCTTGAAGAATATGTGCACCAGGAcgatgctcacacacacacacacacacacacacccgtcttGTAATATCCATGCACCAGGAcgatgcccacacacacacacacacacacacacacacacacctgtcttgtAATATCCATGCACTAGGACGATGCCCAGGTTGGTGGGTTTGAGCTTGCGTCCGTTCTCCACTGTCACATAATTCCTCTGAGAGATGTTGTTGATATGGACCGGGATACTGGCGTCAgtacctatgccgTGTTTctccatcagtgtgatgaggtcGGCCTCAGTAAGGTAGTCTGGAGGGCTGGTCTGCCTCTCCACTAGTTTAATCTCCTCCACTGTGAAGACATCTCCCCTCTCACACACTGGCATGGCCTCCTCCAGAGGGATACCCAGCCACGGCATCACCTCCGTAAAGCCTGTGTCCCAGTCACAACAAACATTTAGACATC

Function

symbol description
top3b Predicted to enable DNA topoisomerase activity. Predicted to be involved in DNA topological change. Predicted to be active in nucleus. Orthologous to human TOP3B (DNA topoisomerase III beta).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU532930 True 480 lncRNA 0.51 2 6593024 6593649

Neighbor

gene id symbol gene type direction distance location
LOC118964815 LOC106607873 coding upstream 104418 6482012 ~ 6488606 (+)
LOC110518225 LOC106607873 coding upstream 164885 6423141 ~ 6428139 (+)
LOC110510500 LOC106607873 coding upstream 361624 6224254 ~ 6231849 (+)
LOC118964813 NA coding upstream 419613 6166943 ~ 6173411 (+)
LOC118964812 LOC106607869 coding upstream 504301 6078177 ~ 6088723 (+)
LOC110525188 NA coding downstream 15272 6608921 ~ 6609844 (+)
ydjc ydjc coding downstream 89258 6682907 ~ 6692547 (+)
ccl19a.2 LOC106585882 coding downstream 117245 6710688 ~ 6713091 (+)
ccl19a.1 LOC106585878 coding downstream 126231 6719880 ~ 6741493 (+)
LOC110525076 LOC106570860 coding downstream 157332 6750981 ~ 6771402 (+)
G468841 LOC106590901 non-coding upstream 35966 6550977 ~ 6557058 (+)
G468822 NA non-coding upstream 69499 6507902 ~ 6523525 (+)
G468639 NA non-coding upstream 88546 6501918 ~ 6504478 (+)
G468820 NA non-coding upstream 97340 6494938 ~ 6495684 (+)
G468765 LOC106607873 non-coding upstream 104606 6423414 ~ 6488418 (+)
G468875 NA non-coding downstream 55035 6648684 ~ 6649239 (+)
G468878 NA non-coding downstream 64760 6658409 ~ 6708164 (+)
G468883 NA non-coding downstream 71452 6665101 ~ 6665789 (+)
G468885 NA non-coding downstream 75801 6669450 ~ 6738008 (+)
G468897 NA non-coding downstream 103723 6697372 ~ 6702759 (+)
G468791 NA other upstream 213755 6350096 ~ 6379704 (+)
G468768 NA other upstream 249409 6254476 ~ 6371873 (+)
G468755 NA other upstream 348523 6210199 ~ 6244501 (+)
G468887 sdf2l other downstream 78859 6672508 ~ 6674387 (+)
G469048 NA other downstream 758537 7352186 ~ 7352578 (+)
LOC110525210 LOC106585898 other downstream 1014668 7608126 ~ 7652997 (+)

Expression


Co-expression Network