G468897


Basic Information

Item Value
gene id G468897
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6697372 ~ 6702759 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU532998
TGGTTAGCCATCTTTAttatgaaacattggaccaaatCACACAGCTGTTACACTGCTCCAGTCCCCTGTCCTGTTTTACACCCTACTGGCAGACAGACAATTAGAGAGACAGCCCTCtcccagctcaatataaacaatAAGAGACAGCCCTCTCCCAGCTCAATATAAAGGCGCCTGTTATAACAGTCTCTGTGCGTCTCTGTTCAAAACCAGTCTGTGTTTGAAATAGCATCTTATTCCATATATAGCGCACTACTgatgaccaggacacacagggtTATGGTTACAAGTAcagcactatgtaaggaatagggtgccattttcgCCCCAACCCGGTCTTTAGACTCCACCTGGCATTGCCCCGACAGACAGTTCACTAAGTCCCTTGTTACAGTGGATATATCGGCCACTGATTTGATATATTCATGTCAAGTCTCTCGCGATGACACGAGATTTGGTTTGCGGTGCTAAGATTATTtttatgtagagagagagagagagagagagagagagagagagagagaaaggagGTGGGGTTCTGATTTTGCGTGTGACCATGAGCAGACAGGAGAGCAGACttaaagccaatttatgcttgattcCGAAAAGATGGTCGGAGGCGCTGTATGGAGGGTGTGATGCAATTGTGGAGCCacgcagaggccaaattgagctccaCACCGCATTCACCGCGCGCCACCCAAATGTTGTAACAGTTCcttatagctccgcattgacctGATTGGTTGATATTAAGTGGGGGggtgggaggtcctgtataaacacaaactcacttccttgacaacagctctgcaaAGGAAGTATACATGCCCTGGCTTTAGAAGCTGTATCTCAGTAAATGTTGTGTGGCCACTGCAGAGCTTTTTACAGGAAACAAACTGTACGGTGTCACTACTATTTCTACCTCCCACTGTCTTGAGATGGCAAACTGGTATCTAAAATGTGTATAGGAGAAAAGTTAGAACCCAAGACACACAGCATGGTGGGAACGGTAGAACCAGTGGGTGGGGGTATACAACCACATTATAACACAAGAGGGAGATGTTTTAAGTCGGAATGGCACTTCTGCCTATAAAGCAAAAAAAACGAACCAGAAGGAAGAATAAGACCATCTAATGCAAAGAGGGGCATCTTTCAAAACATTTTGGACTGGTGAAGGGGAGTGTGAACGATGATCATCTCCGGTCAATTGCACTTGTAATTCATTACAATATTAGGGTATTATCAGTGGCCAttttgtgtctgtctgctcagTGGGCTGGCTTCAAGCCGAGGGGAAGGACAACTGAGAGAGGGCTTGTTCCACAGAATACAGTGCAACTTCAGAAGCAGAGAAGTCCAAGGGAAAACATTTCAGCACACACTTCCAGGGCCTAGCAAGCtatgagagagaggttgtttgtTTCAGTAAGACATGCCATTTAGGGTTGATAGAAAACAAGATGAGACTAGAGAACAGAACAAAGAAAGTAAAGGATAACCACAACTTTTCCTTCTGTCAGAAAGATCTCCTTCCAGAAGTGAGGAGAAAGGTCTACAATACTCAAGCAGTGATTTCTTGTTTTCCCCACCccaatttttttaaacattttttttttctccctctattTTGTTTTCCCTCCTTAGTTCTCCATATTTAACATGGACATTCTAACCACTTATTTTTTCTTGTCTTTTTCATTTTTCATATTTTAATTTAAGAAAATAGTATAAAGTTAGTAGCGGATCGATCGATCGATCGCCAGGAGGAGAAACCGGTCTGATCCAGAGTCCTGCGAAGATGGTGGGGCTGCAGCCACACGCGGAGGTGAGGCTAGGGCTGCTCCCGGGCTGctaggatgatgtgtgtgtgtgtgtggggagatggggaggagagagggggaaggtacagagaggagggaggagaacagagactttcagttggggagaggagagagagagagagggctacaaACTGGTCAGGTAATCAGTCCATTGGTCTCTTTTCTCCATGTTTCTTTGTAAACTCTTCTGCGTTCTTAAAGAATTTTTTCCGGTCCTTTGAGTATTCTTCTGCTAGGTCTGCCCTCAGGGGGTGCTCTGGCTGGGGGTCGTTCACCAACGCAATCAGGGagaggagagagagaaacatcatgATATGTTAAGGCCCCTCCAACGACTCTGTTGATGGTAATGTACAATCCTTCCAAGGATTGTGGCTGAGTAACCTTCCGAAATCCCTACATTGAGTCTGATGTCAATCAAGTAATaaatagagagatagataa

Function

NR:

description
LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 L3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU532998 True 2288 lncRNA 0.45 3 6697372 6702759

Neighbor

gene id symbol gene type direction distance location
ydjc ydjc coding upstream 4825 6682907 ~ 6692547 (+)
LOC110525188 NA coding upstream 87528 6608921 ~ 6609844 (+)
LOC118964815 LOC106607873 coding upstream 208766 6482012 ~ 6488606 (+)
LOC110518225 LOC106607873 coding upstream 269233 6423141 ~ 6428139 (+)
LOC110510500 LOC106607873 coding upstream 465972 6224254 ~ 6231849 (+)
ccl19a.2 LOC106585882 coding downstream 8135 6710688 ~ 6713091 (+)
ccl19a.1 LOC106585878 coding downstream 17121 6719880 ~ 6741493 (+)
LOC110525076 LOC106570860 coding downstream 48222 6750981 ~ 6771402 (+)
trnae-uuc NA coding downstream 48969 6751728 ~ 6751803 (+)
LOC118964793 LOC106597030 coding downstream 186090 6888849 ~ 6895793 (+)
G468883 NA non-coding upstream 31583 6665101 ~ 6665789 (+)
G468875 NA non-coding upstream 48133 6648684 ~ 6649239 (+)
G468855 top3b non-coding upstream 103723 6593024 ~ 6593649 (+)
G468841 LOC106590901 non-coding upstream 140314 6550977 ~ 6557058 (+)
G468822 NA non-coding upstream 173847 6507902 ~ 6523525 (+)
G468920 NA non-coding downstream 32938 6735697 ~ 6756156 (+)
G468929 NA non-coding downstream 69791 6772550 ~ 6772965 (+)
G468930 NA non-coding downstream 72275 6775034 ~ 6781668 (+)
G468907 NA non-coding downstream 91656 6794415 ~ 6795906 (+)
G468938 LOC106585891 non-coding downstream 97421 6800180 ~ 6800514 (+)
G468887 sdf2l other upstream 22985 6672508 ~ 6674387 (+)
G468765 LOC106607873 other upstream 208954 6423414 ~ 6488418 (+)
G468791 NA other upstream 318103 6350096 ~ 6379704 (+)
G468768 NA other upstream 353757 6254476 ~ 6371873 (+)
G469048 NA other downstream 649427 7352186 ~ 7352578 (+)
LOC110525210 LOC106585898 other downstream 905558 7608126 ~ 7652997 (+)
G470292 NA other downstream 1510521 8213280 ~ 8217274 (+)

Expression


Co-expression Network