G468938 (LOC106585891)


Basic Information

Item Value
gene id G468938
gene name LOC106585891
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6800180 ~ 6800514 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU533054
CCCCAACCTTCCTCTGTTCCCCACCCCGCCTCCTTCCTTTTTAACCTCCGCCCCTTCTCTCATAGACTCTGCTCTCCGTGACTCCGAGCTCCACCCCCTCATGAGCTGGAAGGTGGAGCATGCGGATTGGTCCAGGCCCTGGCCAGCGGAGGCGGAGCAGAGCTGTTCCTTGCTTCTCAGGTGTTCCTGGTTCCTCTGGACCAATCGCGGCTCAAAGAGCAGATCCAGATCAAAGGGCAACAGAGACagaggctggaggaggaggaggagctccTCCAAGAGAGGCTGGCACGGCCCCTGAGACAACGGCAGGAAACCCCACGGGTGGTAGTGAG
>TU533053
CCTCCGCCCCTTCTCTCATAGACTCTGCTCTCCGTGACTCCGAGCTCCACCCCCTCATGAGCTGGAAGGTGGAGCATGCGGATTGGTCCAGGCCCTGGCCAGCGGAGGCGGAGCAGAGCTGTTCCTTGCTTCTCAGGTGTTCCTGGTTCCTCTGGACCAATCGCGGCTCAAAGAGCAGATCCAGATCAAAGGGCAACAGAGACagaggctggaggaggaggaggagctccTCCAAGAGAGGCTGGCACGGCCCCTGAGACAACGGCAGGAAACCCCACGGGTGGTAGTGAG

Function

NR:

description
iporin-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU533054 False 335 lncRNA 0.61 1 6800180 6800514
TU533053 True 291 lncRNA 0.62 1 6800224 6800514

Neighbor

gene id symbol gene type direction distance location
LOC110525076 LOC106570860 coding upstream 28778 6750981 ~ 6771402 (+)
trnae-uuc NA coding upstream 48377 6751728 ~ 6751803 (+)
ccl19a.1 LOC106585878 coding upstream 58687 6719880 ~ 6741493 (+)
ccl19a.2 LOC106585882 coding upstream 87089 6710688 ~ 6713091 (+)
ydjc ydjc coding upstream 107633 6682907 ~ 6692547 (+)
LOC118964793 LOC106597030 coding downstream 88335 6888849 ~ 6895793 (+)
LOC110525195 NA coding downstream 107094 6907344 ~ 6929358 (+)
LOC118964818 LOC106597030 coding downstream 111306 6911820 ~ 6914445 (+)
LOC118964819 LOC106597030 coding downstream 133100 6933614 ~ 6935571 (+)
LOC118964794 LOC106600203 coding downstream 147502 6948016 ~ 6950249 (+)
G468907 NA non-coding upstream 4274 6794415 ~ 6795906 (+)
G468930 NA non-coding upstream 18512 6775034 ~ 6781668 (+)
G468929 NA non-coding upstream 27215 6772550 ~ 6772965 (+)
G468920 NA non-coding upstream 44024 6735697 ~ 6756156 (+)
G468885 NA non-coding upstream 62172 6669450 ~ 6738008 (+)
G468939 NA non-coding downstream 333 6800847 ~ 6801926 (+)
G468940 NA non-coding downstream 2150 6802664 ~ 6802941 (+)
G468945 NA non-coding downstream 9312 6809826 ~ 6810286 (+)
G468948 NA non-coding downstream 12884 6813398 ~ 6814115 (+)
G468949 NA non-coding downstream 14849 6815363 ~ 6815940 (+)
G468887 sdf2l other upstream 125793 6672508 ~ 6674387 (+)
G468841 LOC106590901 other upstream 247085 6550977 ~ 6557058 (+)
G468765 LOC106607873 other upstream 311762 6423414 ~ 6488418 (+)
G469048 NA other downstream 551672 7352186 ~ 7352578 (+)
LOC110525210 LOC106585898 other downstream 807803 7608126 ~ 7652997 (+)
G470292 NA other downstream 1412766 8213280 ~ 8217274 (+)
G470599 NA other downstream 2009459 8809973 ~ 8810943 (+)
G470770 NA other downstream 2422837 9223351 ~ 9225513 (+)

Expression


Co-expression Network