G468939


Basic Information

Item Value
gene id G468939
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6800847 ~ 6801926 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU533055
CAGCAGTCCAAAGATGAATGAGTTGAGTCTCATGCTGTGGCTGGTGAGCTCTGAGTACTGGGACACCTTGGAGAACAGGCTGTGGACAACACAGGTGGATGGGCCaGTTGTGTGGAGGCCTCTACCAGGCTCCAGGGCTGGTTGCGTCTCTGTCCGATGATCAGGTCCAGGACGTAGGCCTTCAGCCCATCCCCCAGCACCTCCCTTAGGGCCGGACACAGGTACTTCAGGATCAGGTGGCCCACGTTTGGACTCACCCAACTGTTACCCAGCTTCGCCTGGAGGacgggggagggtgggggggagaCGAAGGAGAGGGGGACGACGAcgaaggagaggggggagcggTAGAAGGAGAGAGTGTGAACAGGATgtggaaggaaggagaaagaaaggaggtggtagaaggggaggaaagaaaaaaggagaggttagacagagatatagagaaatagagagagaaaagggggagagaaatggggagagaaatggggagagaaatggggagagaaagggggagagaaatagatagagaaagggggagagaaatggggagagaaag

Function

NR:

description
iporin-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU533055 True 562 lncRNA 0.55 2 6800847 6801926

Neighbor

gene id symbol gene type direction distance location
LOC110525076 LOC106570860 coding upstream 29445 6750981 ~ 6771402 (+)
trnae-uuc NA coding upstream 49044 6751728 ~ 6751803 (+)
ccl19a.1 LOC106585878 coding upstream 59354 6719880 ~ 6741493 (+)
ccl19a.2 LOC106585882 coding upstream 87756 6710688 ~ 6713091 (+)
ydjc ydjc coding upstream 108300 6682907 ~ 6692547 (+)
LOC118964793 LOC106597030 coding downstream 86923 6888849 ~ 6895793 (+)
LOC110525195 NA coding downstream 105682 6907344 ~ 6929358 (+)
LOC118964818 LOC106597030 coding downstream 109894 6911820 ~ 6914445 (+)
LOC118964819 LOC106597030 coding downstream 131688 6933614 ~ 6935571 (+)
LOC118964794 LOC106600203 coding downstream 146090 6948016 ~ 6950249 (+)
G468938 LOC106585891 non-coding upstream 333 6800180 ~ 6800514 (+)
G468907 NA non-coding upstream 4941 6794415 ~ 6795906 (+)
G468930 NA non-coding upstream 19179 6775034 ~ 6781668 (+)
G468929 NA non-coding upstream 27882 6772550 ~ 6772965 (+)
G468920 NA non-coding upstream 44691 6735697 ~ 6756156 (+)
G468940 NA non-coding downstream 738 6802664 ~ 6802941 (+)
G468945 NA non-coding downstream 7900 6809826 ~ 6810286 (+)
G468948 NA non-coding downstream 11472 6813398 ~ 6814115 (+)
G468949 NA non-coding downstream 13437 6815363 ~ 6815940 (+)
G468950 LOC106585891 non-coding downstream 14540 6816466 ~ 6817329 (+)
G468887 sdf2l other upstream 126460 6672508 ~ 6674387 (+)
G468841 LOC106590901 other upstream 247752 6550977 ~ 6557058 (+)
G468765 LOC106607873 other upstream 312429 6423414 ~ 6488418 (+)
G469048 NA other downstream 550260 7352186 ~ 7352578 (+)
LOC110525210 LOC106585898 other downstream 806391 7608126 ~ 7652997 (+)
G470292 NA other downstream 1411354 8213280 ~ 8217274 (+)
G470599 NA other downstream 2008047 8809973 ~ 8810943 (+)
G470770 NA other downstream 2421425 9223351 ~ 9225513 (+)

Expression


Co-expression Network