XLOC_024059 (tnni4b.1)


Basic Information

Item Value
gene id XLOC_024059
gene name tnni4b.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 20077225 ~ 20087924 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047741
AACATTTATTCCTCACCAGCACCACACAGATCATCCTGCCCTCATCGCCTTCTAGTTCAAGGGTCCATACAGAGAAATCACCATGTCTGAAGGACCGAAAAAATCAAAGTATACTGCCACAAGGCGACTGCTATTAAAAACTAAATTAATGAAGAAGGCCACGTCTATGCTGGCAGCTGAAAGAGAACAGAATAAAAGAGAAAGAGATGATGCTCTAAATGAGAGGGTTCCTCCTCTTAAACTGTCTGGCTTGTCAGCCCAGGAGCTCCAGGAACTTTGCAAAGAGCTTCACCGCAAGATTGATGATGTTGACGAGGCTCGATATGATCTTGAAATAAAAGTGGCTAAAAATGAAATAGAGATCCAGACTTTGACCCAGAAGATTTGGGACATGAAGGGTTCAAAGCAACGAACCAAACTGAAGAGGGTCAAGAAGTCACATGACTCCATGTTTGGTGCACTGACTGAATCCAAAATGTCATCGAAGGCAGATTTCAAAGCCAATCTAAAGACAgtaaagaaagaagaagaaaagAAAGAAGAGGTGACCGACTGGCGTAAGAATGTGGAGGCCATGTCTGGAATGGAAGGCAGAAAGAAGCTGTTTGATGCTggacaataaaaaaaCAAAAAAGTAACACAATCAATATGCACAAAGACAAGGAGGCTCCCAACACACATGGTTTGAAGCAAGAAAATCCAAACCAAACtaaaatttgatttttttgttatgACTATTGAAGTCAACCAATCACTGTTTACTGTTCATAATGTGTTTTGTTGTCAACCTTAGAACTTAGCATGTCTTTAATAGTTTCTGTTCTTTGTTGGACTATGTAGACAGAAATGTTTACATTTGAAACACTTTTATGTTTTGTGTAGTGCTGAAAAACTGGAAATGAGTTTTACTGTGCTGTTCAGGAACAAAATAT
>TCONS_00047742
GGTCCATACAGAGAAATCACCATGTCTGAAGGGTAAGcggttattaacattttaaaaatatttgtaaaattattaaGATTGATTATGAGTGGATCAGTTTATCTTTTTTGTTAATCCATTTTGGGGGCGTTTTCTTTCCTTTTTGGTTTGTTCTGTGCTGTAGACCGGTAAGTCACTTTACTTTTGGCATTATATACCACAATTCATAAGatttataatgttaaaacaaTATTTGAAATGATTAAGCATGACTTGTGTTGCTTTTCAGAAAAAATCAAAGTATACTGCCACAAGGCGACTGCTATTAAAAACTAAATTAATGAAGAAGGCCACGTCTATGCTGGCAGCTGAAAGAGAACAGAATAAAAGAGAAAGAGATGATGCTCTAAATGAGAGGGTTCCTCCTCTTAAACTGTCTGGCTTGTCAGCCCAGGAGCTCCAGGAACTTTGCAAAGAGCTTCACCGCAAGATTGATGATGTTGACGAGGCTCGATATGATCTTGAAATAAAAGTGGCTAAAAATGAAATAGAGATCCAGACTTTGACCCAGAAGATTTGGGACATGAAGGGTTCAAAGCAACGAACCAAACTGAAGAGGGTCAAGAAGTCACATGACTCCATGTTTGGTGCACTGACTGAATCCAAAATGTCATCGAAGGCAGATTTCAAAGCCAATCTAAAGACAgtaaagaaagaagaagaaaagAAAGAAGAGGTGACCGACTGGCGTAAGAATGTGGAGGCCATGTCTGGAATGGAAGGCAGAAAGAAGCTGTTTGATGCTggacaataaaaaa

Function

symbol description
tnni4b.1 Predicted to be involved in cardiac muscle contraction and skeletal muscle contraction. Predicted to be part of troponin complex.

GO:

id name namespace
GO:0006936 muscle contraction biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0005861 troponin complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-198 Predicted to be involved in cardiac muscle contraction and skeletal muscle contraction. Predicted to be part of troponin complex.

Ensembl:

ensembl_id ENSDARG00000092999

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047741 False 932 mRNA 0.39 9 20077225 20087924
TCONS_00047742 True 797 mRNA 0.38 5 20081553 20087530

Neighbor

gene id symbol gene type direction distance location
XLOC_024058 zgc:194665 coding upstream 73697 19999623 ~ 20003528 (+)
XLOC_024057 NA coding upstream 78999 19987068 ~ 19998226 (+)
XLOC_024056 kcna1a coding upstream 118947 19954576 ~ 19958278 (+)
XLOC_024055 kcna6a coding upstream 125894 19947096 ~ 19951331 (+)
XLOC_024054 gramd4b coding upstream 140627 19870603 ~ 19936598 (+)
XLOC_024060 tnni4b.2 coding downstream 2062 20089986 ~ 20099773 (+)
XLOC_024061 NA coding downstream 15341 20103265 ~ 20109429 (+)
XLOC_024062 bpgm coding downstream 28483 20116407 ~ 20127087 (+)
XLOC_024063 cald1b coding downstream 53002 20140926 ~ 20211831 (+)
XLOC_024064 tnnt2d coding downstream 128040 20215964 ~ 20226584 (+)
XLOC_023973 CR762411.1 misc upstream 4859116 15217824 ~ 15218109 (+)
XLOC_024053 CU041386.1 non-coding upstream 302550 19774559 ~ 19774675 (+)
XLOC_024041 NA non-coding upstream 631713 19443951 ~ 19445512 (+)
XLOC_024040 NA non-coding upstream 715138 19356344 ~ 19362087 (+)
XLOC_024031 NA non-coding upstream 1152834 18920543 ~ 18924391 (+)
XLOC_024066 CR846093.3 non-coding downstream 504559 20592483 ~ 20592597 (+)
XLOC_024067 CR846093.2 non-coding downstream 515972 20603896 ~ 20604012 (+)
XLOC_024070 NA non-coding downstream 765276 20853200 ~ 20870875 (+)
XLOC_024071 NA non-coding downstream 871259 20959183 ~ 20959582 (+)

Expression


Co-expression Network