G468982


Basic Information

Item Value
gene id G468982
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6896005 ~ 7249085 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU533115
tgtgcatttaaacagattggaaaattccagagaatgatgtcatggctttagaagcttctgataggctaattgacataatttgaggcaATTGGATgtgtacctgtggatgtatttcaaggcctaccttaaaactcagtgcctctttgcttgacatcatgggaaaattgaaagaaatcagccaagacctcagaaaaaattgtagacctccacaagtctggttcatccttgggagcaagttccaaacgcctgaaggtaccacattcatctgtacaaacaatagtacgcaagtataaacaccatgggaccacgcagccgtc
>TU533116
tgtgcatttaaacagattggaaaattccagagaatgatgtcatggctttagaagcttctgataggctaattgacataatttgaggcaATTGGATGTttacctgtggctgtatttcaaggcctaccttaaaactcagtgcctctttgcttgacatcatgggaaaattgaaagaaatcagccaagacctcagaaaaaattgtagacccccacaaatctggttcatccttgggagcaagttctaaacgcctgaaggtaccacattcatctgtacaaacaatagtacacaagtataaacaccatgggaccacgcagctgtcataccgctcaggaaggagacgtgttctgtctcctagagatgaacgtactttggtgcaaaaagtgcaaatcaatcccagaacaacagcagaggaccttgtgacgtagctggaggaaacaggtacaacaatatctttatccacagtaaaacgagtccaatatcgacataacctgaaaggccctcagcaaggaagaagccactgctccaaaaccaccatagaaaagccagacaacggtttgcaactgcacatgtagacaaagatcgtactttttggagcaatgtcctctggtctgatgaaacaatttTTTTTCTAAAATTCACcgaatttattgtgggaagcttgtggaaggctacccgaaacgtttgacacaagttaaacaatttaaagggaatgctaccaaatacaaattgagtgtatttaaacttctga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU533115 False 317 lncRNA 0.42 3 6896005 7249085
TU533116 True 746 lncRNA 0.41 2 6896005 6956291

Neighbor

gene id symbol gene type direction distance location
LOC118964793 LOC106597030 coding upstream 212 6888849 ~ 6895793 (+)
LOC110525076 LOC106570860 coding upstream 124603 6750981 ~ 6771402 (+)
trnae-uuc NA coding upstream 144202 6751728 ~ 6751803 (+)
ccl19a.1 LOC106585878 coding upstream 154512 6719880 ~ 6741493 (+)
ccl19a.2 LOC106585882 coding upstream 182914 6710688 ~ 6713091 (+)
LOC110525200 NA coding downstream 18174 7267259 ~ 7268326 (+)
LOC118964834 NA coding downstream 33267 7282352 ~ 7283531 (+)
LOC118964835 LOC106600203 coding downstream 38111 7287196 ~ 7289594 (+)
LOC118964836 LOC106600203 coding downstream 52919 7302004 ~ 7304410 (+)
LOC118936656 NA coding downstream 69521 7318606 ~ 7319147 (+)
G468975 NA non-coding upstream 12498 6881941 ~ 6883507 (+)
G468966 NA non-coding upstream 31503 6856866 ~ 6864502 (+)
G468953 NA non-coding upstream 73855 6821895 ~ 6822150 (+)
G468952 NA non-coding upstream 75942 6819498 ~ 6820063 (+)
G468991 NA non-coding downstream 11467 7260552 ~ 7262569 (+)
G469047 NA non-coding downstream 101483 7350568 ~ 7350780 (+)
G469492 NA non-coding downstream 108081 7357166 ~ 7357463 (+)
G469498 NA non-coding downstream 117880 7366965 ~ 7367188 (+)
G469500 NA non-coding downstream 119941 7369026 ~ 7369331 (+)
G468887 sdf2l other upstream 221618 6672508 ~ 6674387 (+)
G468841 LOC106590901 other upstream 342910 6550977 ~ 6557058 (+)
G468765 LOC106607873 other upstream 407587 6423414 ~ 6488418 (+)
G469048 NA other downstream 103101 7352186 ~ 7352578 (+)
LOC110525210 LOC106585898 other downstream 359232 7608126 ~ 7652997 (+)
G470292 NA other downstream 964195 8213280 ~ 8217274 (+)
G470599 NA other downstream 1560888 8809973 ~ 8810943 (+)
G470770 NA other downstream 1974266 9223351 ~ 9225513 (+)

Expression


Co-expression Network