XLOC_024062 (bpgm)


Basic Information

Item Value
gene id XLOC_024062
gene name bpgm
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 20116407 ~ 20127087 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047748
ACCAAAATCTTGAAGAAGGCGAGCACATTGCTTGAGGAGGAGAAAGAGCAGAAAAGGCTGGACAGAGAGCAAACCCTTAGTGAAAAAGGTCCTCCTCTCAAACTCTCCGGACTGTCGGTTCAGGACTTACAGGTTCATATTTGTACGCATTTTAAGTCAGAATTCGCTTCATAAAGTTCTTTCTCACTCGCCAGTGCTCTGTTTACAGAATTTATGCAAAGAACTGCACCAAAAAATCGATGTAGTTGATGAGGAGCGATATGATGTTCAATCTAAAGTTACCAAAAATGAAAAAGAGGTACATGTTGATGATGTAGAAGCATTATTGAACGTATTTGTTACTTATTGAATAGCACTTATTGGTGTGTATTTTTAATACCATAGATTGTAGATTTAAACCATAAAATCTTCGAGCTGAAGGGTAAAATGAAGAGACCTGCCTTGAAGAGAGTGCGAGTGTCTGCTGATGCCATGTTGGGAGCTCTGCTCGGTGCCAAACACAAAGAGTCCATTGACTTTAAAGCAAACCTAAAGACAGTGAAGAAAGAAGAGGAAAAGGCTTCCATACTACCTCTTCTGAATGTCCAAATACAAACTCTTCCTCCTTCGGCACGGAGAGGGAGCCTGGAACAAAGAGAACCGCTTCTGCAGCTGGGTTGATCAAAAACTGAGTGAGAACGGTGTGGTGGAAGCTCAAGAATGTGGCCGCCTTTTAAAAGAGAATGGCTACCAATTGGACCAGGTTTTTACCTCCATACTCAGCCGTTCCATCCACACTGCCTGGTTGGTGCTTGAGGCCATGGGACACGAGTGGGTCCCTGTGACAAAATCGTGGAGGTTAAACGAACGGCATTACGGTGCCCTGATTGGTCTCAATCGTGCTGAAATGGCATTAAACCATGGAGAGGAGCAGGTTAAACTGTGGAGGCGCAGTTATGACATCACTCCACCTCCCATACATGAGTCACATCCCTATTATGCTGAAATTTACAATGACCGTCGATACAGTACATGTGACGTCCCGAAGGAGGAACTGCCCAAAACAGAGAGTCTAAAGGAAGTGTTAGACAGACTTCTTCCTTACTGGAATGATGTCATTGTACCGGTGATCAAAAGCGGCCAGACGGTCCTCATCTCTGCACATGGCAACAGCTGCAGGGCTTTGCTTAAACACTTGGAAGCTATATCTGAAACAGACATCGTCAATGTAACACTGCCCACAGGAGTACCTGTCCTGCTGGAGCTGGATGAAGACCTTCGACCGGTCAAACCCCGTCAGCTTCTGGGCGACCAGGCCAAAATTCAGGCAGCCATTAAAAAGGTGGAGGACCAAGGGAAAGTTAATGCGCAAAATAAATAG
>TCONS_00047747
ACCAAAATCTTGAAGAAGGCGAGCACATTGCTTGAGGAGGAGAAAGAGCAGAAAAGGCTGGACAGAGAGCAAACCCTTAGTGAAAAAGGTCCTCCTCTCAAACTCTCCGGACTGTCGGTTCAGGACTTACAGAATTTATGCAAAGAACTGCACCAAAAAATCGATGTAGTTGATGAGGAGCGATATGATGTTCAATCTAAAGTTACCAAAAATGAAAAAGAGGTACATGTTGATGATGTAGAAGCATTATTGAACGTATTTGTTACTTATTGAATAGCACTTATTGGTGTGTATTTTTAATACCATAGATTGTAGATTTAAACCATAAAATCTTCGAGCTGAAGGGTAAAATGAAGAGACCTGCCTTGAAGAGAGTGCGAGTGTCTGCTGATGCCATGTTGGGAGCTCTGCTCGGTGCCAAACACAAAGAGTCCATTGACTTTAAAGCAAACCTAAAGACAGTGAAGAAAGAAGAGGAAAAGGCTTCCATACTACCTCTTCTGAATGTCCAAATACAAACTCTTCCTCCTTCGGCACGGAGAGGGAGCCTGGAACAAAGAGAACCGCTTCTGCAGCTGGGTTGATCAAAAACTGAGTGAGAACGGTGTGGTGGAAGCTCAAGAATGTGGCCGCCTTTTAAAAGAGAATGGCTACCAATTGGACCAGGTTTTTACCTCCATACTCAGCCGTTCCATCCACACTGCCTGGTTGGTGCTTGAGGCCATGGGACACGAGTGGGTCCCTGTGACAAAATCGTGGAGGTTAAACGAACGGCATTACGGTGCCCTGATTGGTCTCAATCGTGCTGAAATGGCATTAAACCATGGAGAGGAGCAGGTTAAACTGTGGAGGCGCAGTTATGACATCACTCCACCTCCCATACATGAGTCACATCCCTATTATGCTGAAATTTACAATGACCGTCGATACAGTACATGTGACGTCCCGAAGGAGGAACTGCCCAAAACAGAGAGTCTAAAGGAAGTGTTAGACAGACTTCTTCCTTACTGGAATGATGTCATTGTACCGGTGATCAAAAGCGGCCAGACGGTCCTCATCTCTGCACATGGCAACAGCTGCAGGGCTTTGCTTAAACACTTGGAAGCTATATCTGAAACAGACATCGTCAATGTAACACTGCCCACAGGAGTACCTGTCCTGCTGGAGCTGGATGAAGACCTTCGACCGGTCAAACCCCGTCAGCTTCTGGGCGACCAGGCCAAAATTCAGGCAGCCATTAAAAAGGTGGAGGACCAAGGGAAAGTTAATGCGCAAAATAAATAG
>TCONS_00047749
aacggTTTACTGCTGTTTGTTGATGCTACTATGGTAGTTCCTGTCGCAGAGCTTCAGCTGCTGGGCGGTTTCTGATCTGAAGGCTTCCATACTACCTCTTCTGAATGTCCAAATACAAACTCTTCCTCCTTCGGCACGGAGAGGGAGCCTGGAACAAAGAGAACCGCTTCTGCAGCTGGGTTGATCAAAAACTGAGTGAGAACGGTGTGGTGGAAGCTCAAGAATGTGGCCGCCTTTTAAAAGAGAATGGCTACCAATTGGACCAGGTTTTTACCTCCATACTCAGCCGTTCCATCCACACTGCCTGGTTGGTGCTTGAGGCCATGGGACACGAGTGGGTCCCTGTGACAAAATCGTGGAGGTTAAACGAACGGCATTACGGTGCCCTGATTGGTCTCAATCGTGCTGAAATGGCATTAAACCATGGAGAGGAGCAGGTTAAACTGTGGAGGCGCAGTTATGACATCACTCCACCTCCCATACATGAGTCACATCCCTATTATGCTGAAATTTACAATGACCGTCGATACAGTACATGTGACGTCCCGAAGGAGGAACTGCCCAAAACAGAGAGTCTAAAGGAAGTGTTAGACAGACTTCTTCCTTACTGGAATGATGTCATTGTACCGGTGATCAAAAGCGGCCAGACGGTCCTCATCTCTGCACATGGCAACAGCTGCAGGGCTTTGCTTAAACACTTGGAAGCTATATCTGAAACAGACATCGTCAATGTAACACTGCCCACAGGAGTACCTGTCCTGCTGGAGCTGGATGAAGACCTTCGACCGGTCAAACCCCGTCAGCTTCTGGGCGACCAGGCCAAAATTCAGGCAGCCATTAAAAAGGTGGAGGACCAAGGGAAAGTTAATGCGCAAAATAAATAGGGGTAGAATGTTGGAGTCATTTACACAGGAAATAATTAAAGAGAAAGTTACTTAGTCAGTCAGGCATATAGTACAGAGCCACCAGGTGAAGTTTGGCAAATTCCAACACAAAAAGGCGTACCTGTGATTAGCTGGTTTTAAAACTGGTTTATGGTTATAgtgctattttaagaaacataaAGTGAGTCAATATTTTGAAGTTCCAAAATGCAGACTTGGCACATATATTTTGTTACAGCAAGAGGTCTGTAGACCAAATAATGAAGtatagttaaatattttaaaaataatttagtaaTGTGCGGTTATTTTTTGTTAGATCTTGAATGGATTCTTTTTTCCAAGGGATTTTAGGTTACAGAAAACCAGAGGTGCCTTCCTTTTGAGGGTAAAATAGAAGACACCAGTTGTGTTCAAATAGAATTTGTTTCTAAaggtatttaaaatttaaataagctattttaatcatattacaaatatgtttttaatcaatttattgcatcctgatttttttttcaaaatatttaaattaaatttactgaCCTAAAATGTTGTACGTTTTGGAATAATTccagataaataaacatacattattCACTCCACTATCCAGACTTTCCAAAACACAGACTAAACCTAATCGATGTGGATTCTTATTAATATTCAAAAAATCTGCTTATTAATTAACACTTAGACTTCATGTCTAAAggataatttataatattttgtgtaaatagCACTGGTAgtatattttagatattatttAAGTTATATAAAAGGGACATTTTGTTTtgatctgtatttatttaatatagagatattaagtcataATAAGTTATGTTCAGTTTTCTCATGCAATGCCAAATGTAACCCATACTACCATTTTTTATCTTGTTCTCAACCAGAATGAACTTATTAGCGAGTAAAACTAAGACATACCTGTTGTTTAAAATGTCCATGTGGTGTCACTGTAATCCCTGTATTTAGTTTTTGTGTATTTGATGTTGCTCAACACTGTACTGTATCAATAGGGAAATgttgtatgtttgtatttttgttctAACAGCCATGATGGCTTTCGCTGTTACATATGTCTATGTTTACCCCTTTGTATTTGACTGTGGCACATCATAGCTCATTCACATTAAAAGTTTGgaataattaattacaaattaataattgTTACAAATTAAAATGTCTGTTTGGGCCTTTAAA

Function

symbol description
bpgm Predicted to enable bisphosphoglycerate mutase activity; hydrolase activity; and phosphoglycerate mutase activity. Predicted to act upstream of or within glycolytic process. Human ortholog(s) of this gene implicated in familial erythrocytosis 8. Orthologous to human BPGM (bisphosphoglycerate mutase).

GO:

id name namespace
GO:0006096 glycolytic process biological_process
GO:0004619 phosphoglycerate mutase activity molecular_function
GO:0016853 isomerase activity molecular_function
GO:0016868 intramolecular transferase activity, phosphotransferases molecular_function
GO:0004082 bisphosphoglycerate mutase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis
ko00260 Glycine, serine and threonine metabolism

ZFIN:

id description
ZDB-GENE-040718-375 Predicted to enable bisphosphoglycerate mutase activity; hydrolase activity; and phosphoglycerate mutase activity. Predicted to act upstream of or within glycolytic process. Human ortholog(s) of this gene implicated in familial erythrocytosis 8. Orthologous to human BPGM (bisphosphoglycerate mutase).

Ensembl:

ensembl_id ENSDARG00000070826

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047748 False 1360 mRNA 0.45 3 20116407 20125875
TCONS_00047747 False 1284 mRNA 0.46 4 20116407 20125875
TCONS_00047749 True 2096 mRNA 0.38 3 20119466 20127087

Neighbor

gene id symbol gene type direction distance location
XLOC_024061 NA coding upstream 6978 20103265 ~ 20109429 (+)
XLOC_024060 tnni4b.2 coding upstream 16634 20089986 ~ 20099773 (+)
XLOC_024059 tnni4b.1 coding upstream 28483 20077225 ~ 20087924 (+)
XLOC_024058 zgc:194665 coding upstream 112879 19999623 ~ 20003528 (+)
XLOC_024057 NA coding upstream 118181 19987068 ~ 19998226 (+)
XLOC_024063 cald1b coding downstream 13839 20140926 ~ 20211831 (+)
XLOC_024064 tnnt2d coding downstream 88877 20215964 ~ 20226584 (+)
XLOC_024065 si:dkey-219c3.2 coding downstream 145058 20272145 ~ 20355483 (+)
XLOC_024066 CR846093.3 coding downstream 465396 20592483 ~ 20592597 (+)
XLOC_024067 CR846093.2 coding downstream 476809 20603896 ~ 20604012 (+)
XLOC_023973 CR762411.1 misc upstream 4898298 15217824 ~ 15218109 (+)
XLOC_024053 CU041386.1 non-coding upstream 341732 19774559 ~ 19774675 (+)
XLOC_024041 NA non-coding upstream 670895 19443951 ~ 19445512 (+)
XLOC_024040 NA non-coding upstream 754320 19356344 ~ 19362087 (+)
XLOC_024070 NA non-coding downstream 726113 20853200 ~ 20870875 (+)
XLOC_024071 NA non-coding downstream 832096 20959183 ~ 20959582 (+)
XLOC_024072 NA non-coding downstream 870592 20997679 ~ 20998615 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000055_06443549_06446405 BPGM coding CI01000055 null 6443549 ~ 6446441 (+)