XLOC_024069 (ergic2)



Basic Information


Item Value
gene id XLOC_024069
gene name ergic2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 20715950 ~ 20726987 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00047758
ctgggGCAGTAAATGGGGTCTAGTGACGCCCCTGGTGGTTATACACATGTAAGTAACACTCTCTGTTTGCATTGGATTTTGATTTATTTGTGCTAGAAATTCTGAAAGttctaaaattattttagttGTTATCTTacaactcaaaacataaatatgtgacaaaaatagcaatgcacccACGTTCTGACGTATTTTTTAGTTATTCAGTCAAATGACTACAATTCCCAGAGTCCGTCGCACCGGAAGCGCGACCACAACACATCAGCGACTCTGTTCTCCGGTCTTCTGCGTTTCTGTCcgttattttattaaatgctcaatgtaaaaaaaacttgATCGTTTGAAAATTGAAGAAAAGACAATGGAGCGCTTAAAATAGCGTCTAAAGGTAGGTCAAAAACGAAGAAAACGGCACGACAGACAAGTGCACGGCTAACCGTGGCTAACAGTAAGCAAATATAACTGAGCATTCACAGACAAACTGTTGAAATAAATCTGTCTCAGAAGCTGTTTAAAGTTAAAACAGCACTTTATCATAACTTATGTGTTTAAAGGGTTGACATATCGTTGTAGACTAGTATCTTGTACAGATCAGTTTgatatatataaattgttaaaCAGATGCTAATTGTGAATTTCAGTTTAAATTCATGAGGAAGAAAAGCGTAAACTGGTGTGACGATGAGGAGGCTGAACAAAAAGAAAGCCCTGAACTTTGTGAGAGAGTTGGATGCTTTTCCAAAGGTTCCTGAGAGTTATGTGGAGACAACAGCCAGCGGAGGAACTGTGTCGTTGTTGGCCTTCACAGCCATGGCGCTCTTGGCCTTCTTTGAATTCTTTGTGTATCGGGACACATGGATGAAGTACGAGTATGAAGTAGATAAGGATTTTACTAGCAAACTCCGAATTAATATTGATATCACAGTTGCCATGAGGTGCCAATTTGTCGGAGCAGATGTTTTGGATCTCGCTGAAACAATGGTGGCATCTGATGGCCTGGTGTATGAACCTGTTGTTTTTGACCTTTCTCCCCAGCAGCGGCTCTGGCACAGgaCACTTTTGCTCATTCAGGGCCGTCTGCGTGAGGAACATTCACTCCAAGATGTTCTGTTCAAGAATGTCATGAAAGGTTCCCCCACTGCTCTCCCACCAAGGGAAGATGATCCAAATCAGCCTTTAAATGCTTGTCGGATACATGGACACCTCTATGTCAATAAAGTAGCAGGAAATTTCCACATCACCGTTGGCAAGGCTATCCCACATCCTCGAGGGCATGCTCATCTAGCAGCGCTGGTCAGCCATGAGACATATAACTTTTCCCATCGGATAGATCATCTGTCTTTTGGAGAAGAAATACCAGGCATTTTAAATCCACTGGATGGCACAGAAAAAGTGTCTGCAGATCATAATCAAATGTTCCAGTACTTTATTACCATTGTGCCCACAAAACTGCAGACGTACAAGGTGTACGCAGACACGCACCAGTATTCAGTCACTGAGCGGGAGCGAGTGATAAACCATGCAGCGGGGAGTCATGGGGTTTCTGGGATCTTTATGAAGTATGACATCAGCTCTCTGATGGTGAAGGTGACTGAGCAGCACATGCCCTTCTGGCAGTTCCTTGTGCGTCTCTGTGGCATCATTGGAGGCATTTTCTCTACAACAGGCATGCTACATAACCTGGTTGGTTTCTGCGTAGATGTGGTTTGTTGTCGATTTAAACTGGGAGTTTACAAGCCGAAAAGTATGAGTGATTTTGATGGCCAAATTAACAGCCTGACACCACTCCTCTCAGAGAATGCCGAACAGTAG
>TCONS_00047759
AGAGTCCGTCGCACCGGAAGCGCGACCACAACACATCAGCGACTCTGTTCTCCGGTCTTCTGCGTTTCTGTCcgttattttattaaatgctcaatgtaaaaaaaacttgATCGTTTGAAAATTGAAGAAAAGACAATGGAGCGCTTAAAATAGCGTCTAAAGTTTAAATTCATGAGGAAGAAAAGCGTAAACTGGTGTGACGATGAGGAGGCTGAACAAAAAGAAAGCCCTGAACTTTGTGAGAGAGTTGGATGCTTTTCCAAAGGTTCCTGAGAGTTATGTGGAGACAACAGCCAGCGGAGGAACTGTGTCGTTGTTGGCCTTCACAGCCATGGCGCTCTTGGCCTTCTTTGAATTCTTTGTGTATCGGGACACATGGATGAAGTACGAGTATGAAGTAGATAAGGATTTTACTAGCAAACTCCGAATTAATATTGATATCACAGTTGCCATGAGGTGCCAATTTGTCGGAGCAGATGTTTTGGATCTCGCTGAAACAATGGTGGCATCTGATGGCCTGGTGTATGAACCTGTTGTTTTTGACCTTTCTCCCCAGCAGCGGCTCTGGCACAGgaCACTTTTGCTCATTCAGGGCCGTCTGCGTGAGGAACATTCACTCCAAGATGTTCTGTTCAAGAATGTCATGAAAGGTTCCCCCACTGCTCTCCCACCAAGGGAAGATGATCCAAATCAGCCTTTAAATGCTTGTCGGATACATGGACACCTCTATGTCAATAAAGTAGCAGGAAATTTCCACATCACCGTTGGCAAGGCTATCCCACATCCTCGAGGGCATGCTCATCTAGCAGCGCTGGTCAGCCATGAGACATATAACTTTTCCCATCGGATAGATCATCTGTCTTTTGGAGAAGAAATACCAGGCATTTTAAATCCACTGGATGGCACAGAAAAAGTGTCTGCAGATCATAATCAAATGTTCCAGTACTTTATTACCATTGTGCCCACAAAACTGCAGACGTACAAGGTGTACGCAGACACGCACCAGTATTCAGTCACTGAGCGGGAGCGAGTGATAAACCATGCAGCGGGGAGTCATGGGGTTTCTGGGATCTTTATGAAGTATGACATCAGCTCTCTGATGGTGAAGGTGACTGAGCAGCACATGCCCTTCTGGCAGTTCCTTGTGCGTCTCTGTGGCATCATTGGAGGCATTTTCTCTACAACAGGCATGCTACATAACCTGGTTGGTTTCTGCGTAGATGTGGTTTGTTGTCGATTTAAACTGGGAGTTTACAAGCCGAAAAGTATGAGTGATTTTGATGGCCAAATTAACAGCCTGACACCACTCCTCTCAGAGAATGCCGAACAGTAGCCGGACTCTCCTCCAGAACACATTGAAAGCTCATTTCACTTACTTTTCAATCACAATAACAGTTGTAAGTCCCTCTAAATAAGTTAAAAGATAATGTTGATGAAATCTGTCATTTgtagtactgtaaaaaaaaaaaactctgcactGACAAACAACTGTTAAACAAGCATAAATCCACAAAGCAGCAGTCTGCACATTCCCA
>TCONS_00047760
TCCGGTCTTCTGCGTTTCTGTCcgttattttattaaatgctcaatgtaaaaaaaacttgATCGTTTGAAAATTGAAGAAAAGACAATGGAGCGCTTAAAATAGCGTCTAAAGTTTAAATTCATGAGGAAGAAAAGCGTAAACTGGTGTGACGATGAGGAGGCTGAACAAAAAGAAAGCCCTGAACTTTGTGAGAGAGTTGGATGCTTTTCCAAAGGTTCCTGAGAGTTATGTGGAGACAACAGCCAGCGGAGGAACTGGTGAGACGAAGATCTATTACGTTATATAatgcagtgttgggtgtaattagttactttaattCAATTTCTTTTCCGCAGAAAAAGTAAACCAGGGGATTAACTTTTAGTTAATTACACGTACTTATGATGAACTTGCCTTAAATACTgtgaattactgtaaaaaaaattcaatttatttttataaaacattatgaGAAGCAGAGTATttgaaatgttgtaaataaattta

Function


symbol description
ergic2 Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in Golgi apparatus; endoplasmic reticulum membrane; and endoplasmic reticulum-Golgi intermediate compartment membrane. Predicted to be integral component of membrane. Predicted to be active in COPII-coated ER to Golgi transport vesicle; endoplasmic reticulum; and membrane. Orthologous to human ERGIC2 (ERGIC and golgi 2).

GO:

id name namespace
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane cellular_component
GO:0030134 COPII-coated ER to Golgi transport vesicle cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040426-1331 Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in Golgi apparatus; endoplasmic reticulum membrane; and endoplasmic reticulum-Golgi intermediate compartment membrane. Predicted to be integral component of membrane. Predicted to be active in COPII-coated ER to Golgi transport vesicle; endoplasmic reticulum; and membrane. Orthologous to human ERGIC2 (ERGIC and golgi 2).

Ensembl:

ensembl_id ENSDARG00000051936

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00047758 False 1812 mRNA 0.43 13 20715950 20726785
TCONS_00047759 False 1535 mRNA 0.44 14 20716176 20726987
TCONS_00047760 True 487 lncRNA 0.34 2 20716226 20716965

Neighbor


gene id symbol gene type direction distance location
XLOC_024068 kxd1 coding upstream 14026 20694177 ~ 20701924 (+)
XLOC_024067 CR846093.2 coding upstream 111938 20603896 ~ 20604012 (+)
XLOC_024066 CR846093.3 coding upstream 123353 20592483 ~ 20592597 (+)
XLOC_024065 si:dkey-219c3.2 coding upstream 360467 20272145 ~ 20355483 (+)
XLOC_024064 tnnt2d coding upstream 489366 20215964 ~ 20226584 (+)
XLOC_024070 NA coding downstream 126213 20853200 ~ 20870875 (+)
XLOC_024071 NA coding downstream 232196 20959183 ~ 20959582 (+)
XLOC_024072 NA coding downstream 270692 20997679 ~ 20998615 (+)
XLOC_024073 chrm2b coding downstream 319869 21046856 ~ 21061911 (+)
XLOC_024074 NA coding downstream 365256 21092243 ~ 21092575 (+)
XLOC_023973 CR762411.1 misc upstream 5497841 15217824 ~ 15218109 (+)
XLOC_024061 NA non-coding upstream 606521 20103265 ~ 20109429 (+)
XLOC_024057 NA non-coding upstream 717724 19987068 ~ 19998226 (+)
XLOC_024053 CU041386.1 non-coding upstream 941275 19774559 ~ 19774675 (+)
XLOC_024079 NA non-coding downstream 597601 21324588 ~ 21344673 (+)

Expression



Co-expression Network