G469853


Basic Information

Item Value
gene id G469853
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 7850351 ~ 7852141 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU534205
GttcatgtttttgaatatttttttattggtgACAGATGAGAACAGGAGAAATGTAAGGAGTAGGGTTGGGGGAGGTCATTCTAATCTTAGATCTAGGGTACATAGGGTAAAATTCAGCCTGGAGGCCCCCCCCCCCACTAAGGACTCAGAGATTGAAGCATTGTCATTCCACTGGTGAGATTAGTGAATGTGTTGGCATTGGTAAAACATAAGACTAACATACAGTAACAATCAGATTTATTAGATCAAACATAAAGACCAACACAGACAGAGCTAACACAACGGGACCCACACCCTTCTCTTATTCTAGTCAAATATGGCTTGCATCCCAAATTATACCCTATTACCTGTTTAGTGCAACAACTTttaaacagggcccatagggctccagtccaaagtagtgcactatatatagggtatagggtccCATTTGTGACACACCCATAGGAGACAATGGGACGGTTAGATTCCAACCAAGAGCATCATTGATTATTACACAGAACAGTGGCATCTCGTGCTTGTGGCTCCTCACCATGCCACTCATGGTTGACATTGATGCAATGTTTGTTAtgcatactgaacaaaaatataaacgcaacaattttaaaatatttttttactgagttaaagttcatataaggaaatcagtcaattgaaataaattccttaggctctaatctatggatttcatatgacacGGGGTGGGGGTGCAGacatggatgggcctgggagagcataggcctatggtagagaaattgacattctattatttggcaacagctctggtggacattcctgcagtcaacatgccaattgcacgctccctcaaaccttgatatctgtagcattgtgttacaaaactgcacattttagagtggccttttattgtccccagcacaaggtgctgcTGTGTAATAAGCGTGCggtttaaatcagcttcttgatatgccacacctgtcaggtggatggattatcttgacaaaaggATCAAATATTCACTAACAGGAACGTaaaaacaaatttgttcacaacatttttgagaaaataagtattttgttcATATGGAaccatttctgggatcttttttaaaatttatttcagctcatgaaaacatGGGACcaccactttacatgttgctCTTGATATTTTGTCATTCAGTGTATGTTTGtatgacaccaacaggctcctgaacagcttctatccctaagccgtaagactgctaaatagctaacaaaatggctacatggTCTTTCTGAGTTGACCCgtgtctttttatttttttttgcacaaTTCTCTATGCACACCCACAGGACTCTACAGTCACGTACACACCCGCATGCAATCataatttatgctgctgctacactgtttatcatatatcccgatgcctagtcaccttacccctatacatatctacctctcactccagtatccctgcctattgttaatatggtattggaactgaccctgtatatacagtggggcaaaaaagtatttagtc
>TU534204
TCAGAGATTGAAGCATTGTCATTCCACTGGTGAGATTAGTGAATGTGTTGGCATTGGTAAAACATAAGACTAACATACAGTAACAATCAGATTTATTAGATCAAACATAAAGACCAACACAGACAGAGCTAACACAACGGGACCCACACCCTTCTCTTATTCTAGTCAAATATGGCTTGCATCCCAAATTATACCCTATTACCTGTTTAGTGCAACAACTTttaaacagggcccatagggctccagtccaaagtagtgcactatatatagggtatagggtccCATTTGTGACACACCCATAGGAGACAATGGGACGGTTAGATTCCAACCAAGAGCATCATTGATTATTACACAGAACAGTGGCATCTCGTGCTTGTGGCTCCTCACCATGCCACTCATGGTTGACATTGATGCAATGTTTGTTAtgcatactgaacaaaaatataaacgcaacaattttaaaatatttttttactgagttaaagttcatataaggaaatcagtcaattgaaataaattccttaggctctaatctatggatttcatatgacacGGGGTGGGGGTGCAGacatggatgggcctgggagagcataggcctatggtagagaaattgacattctattatttggcaacagctctggtggacattcctgcagtcaacatgccaattgcacgctccctcaaaccttgatatctgtagcattgtgttacaaaactgcacattttagagtggccttttattgtccccagcacaaggtgctgcTGTGTAATAAGCGTGCggtttaaatcagcttcttgatatgccacacctgtcaggtggatggattatcttgacaaaaggATCAAATATTCACTAACAGGAACGTaaaaacaaatttgttcacaacatttttgagaaaataagtattttgttcATATGGAaccatttctgggatcttttttaaaatttatttcagctcatgaaaacatGGGACcaccactttacatgttgctCTTGATATTTTGTCATTCAGTGTATGTTTGtatgacaccaacaggctcctgaacagcttctatccctaagccgtaagactgctaaatagctaacaaaatggctacatggTCTTTCTGAGTTGACCCgtgtctttttatttttttttgcacaaTTCTCTATGCACACCCACAGGACTCTACAGTCACGTACACACCCGCATGCAATCataatttatgctgctgctacactgtttatcatatatcccgatgcctagtcaccttacccctatacatatctacctctcactccagtatccctgcctattgttaatatggtattggaactgaccctgtatatacagtggggcaaaaaagtatttagtc
>TU534211
TCAGAGATTGAAGCATTGTCATTCCACTGGTGAGATTAGTGAATGTGTTGGCATTGGTAAAACATAAGACTAACATACAGTAACAATCAGATTTATTAGATCAAACATAAAGACCAACACAGACAGAGCTAACACAACGGGACCCACACCCTTCTCTTATTCTAGTCAAATATGGCTTGCATCCCAAATTATACCCTATTACCTGTTTAGTGCAACAACTTttaaacagggcccatagggctccagtccaaagtagtgcactatatatagggtatagggtccCATTTGTGACACACCCATAGGAGACAATGGGACGGTTAGATTCCAACCAAGAGCATCATTGATTATTACACAGAACAGTGGCATCTCGTGCTTGTGGCTCCTCACCATGCCACTCATGGTTGACATTGATGCAATGTTTGTTAtgcatactgaacaaaaatataaacgcaacaattttaaaatatttttttactgagttaaagttcatataaggaaatcagtcaattgaaataaattccttaggctctaatctatggatttcatatgacacGGGGTGGGGGTGCAGacatggatgggcctgggagagcataggcctatggtagagaaattgacattctattatttggcaacagctctggtggacattcctgcagtcaacatgccaattgcacgctccctcaaaccttgatatctgtagcattgtgttacaaaactgcacattttagagtggccttttattgtccccagcacaaggtgctgcTGTGTAATAAGCGTGCggtttaaatcagcttcttgatatgccacacctgtcaggtggatggattatcttgacaaaaggATCAAATATTCACTAACAGGAACGTaaaaacaaatttgttcacaacatttttgagaaaataagtattttgttcATATGGAaccatttctgggatcttttttaaaatttatttcagctcatgaaaacatGGGACcaccactttacatgttgctCTTGATATTTTGTCATTCAGTGTATGTTTGtatgacaccaacaggctcctgaacagcttctatccctaagccgtaagactgctaaatagctaacaaaatggctacatggTCTTTCTGAGTTGACCCgtgtctttttatttttttttgcacaaTTCTCTATGCACACCCACAGGACTCTACAGTCACGTACACACCCGCATGCAATCataatttatgctgctgctacactgtttatcatatatcccgatgcctagtcaccttacccctatacatatctacctctcactccagtatccctgcctattgttaatatggtattggaactgaccctgtatatacagtggggcaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgagaggcctgtaattttcatcataggtacacttcaactatgacagacaaaatgagaagaaaaaaaatccagaaaatcaaattgtaggatttttaatgaatttatttgcaaattatggtggaaaataagtatttggtcaataacaaaagtgtctCAATACTTAtatgttatataccctttgttggcaatgacagaggtcaaacattttgtctgtcatagttgaagtgtacctatgatgaaaattacaggcctct
>TU534200
GAGACAATGGGACGGTTAGATTCCAACCAAGAGCATCATTGATTATTACACAGAACAGTGGCATCTCGTGCTTGTGGCTCCTCACCATGCCACTCATGGTTGACATTGATGCAATGTTTGTTAtgcatactgaacaaaaatataaacgcaacaattttaaaatatttttttactgagttaaagttcatataaggaaatcagtcaattgaaataaattccttaggctctaatctatggatttcatatgacacGGGGTGGGGGTGCAGacatggatgggcctgggagagcataggcctatggtagagaaattgacattctattatttggcaacagctctggtggacattcctgcagtcaacatgccaattgcacgctccctcaaaccttgatatctgtagcattgtgttacaaaactgcacattttagagtggccttttattgtccccagcacaaggtgctgcTGTGTAATAAGCGTGCggtttaaatcagcttcttgatatgccacacctgtcaggtggatggattatcttgacaaaaggATCAAATATTCACTAACAGGAACGTaaaaacaaatttgttcacaacatttttgagaaaataagtattttgttcATATGGAaccatttctgggatcttttttaaaatttatttcagctcatgaaaacatGGGACcaccactttacatgttgctCTTGATATTTTGTCATTCAGTGTATGTTTGtatgacaccaacaggctcctgaacagcttctatccctaagccgtaagactgctaaatagctaacaaaatggctacatggTCTTTCTGAGTTGACCCgtgtctttttatttttttttgcacaaTTCTCTATGCACACCCACAGGACTCTACAGTCACGTACACACCCGCATGCAATCataatttatgctgctgctacactgtttatcatatatcccgatgcctagtcaccttacccctatacatatctacctctcactccagtatccctgcctattgttaatatggtattggaactgaccctgtatatacagtggggcaaaaaagtatttagtc
>TU534202
cttttattgtccccagcacaaggtgctgcTGTGTAATAAGCGTGCggtttaaatcagcttcttgatatgccacacctgtcaggtggatggattatcttgacaaaaggATCAAATATTCACTAACAGGAACGTaaaaacaaatttgttcacaacatttttgagaaaataagtattttgttcATATGGAaccatttctgggatcttttttaaaatttatttcagctcatgaaaacatGGGACcaccactttacatgttgctCTTGATATTTTGTCATTCAGTGTATGTTTGtatgacaccaacaggctcctgaacagcttctatccctaagccgtaagactgctaaatagctaacaaaatggctacatggTCTTTCTGAGTTGACCCgtgtctttttatttttttttgcacaaTTCTCTATGCACACCCACAGGACTCTACAGTCACGTACACACCCGCATGCAATCataatttatgctgctgctacactgtttatcatatatcccgatgcctagtcaccttacccctatacatatctacctctcactccagtatccctgcctattgttaatatggtattggaactgaccctgtatatacagtggggcaaaaaagtatttagtc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU534205 False 1501 lncRNA 0.40 1 7850351 7851851
TU534204 False 1356 lncRNA 0.40 1 7850496 7851851
TU534211 False 1646 lncRNA 0.38 1 7850496 7852141
TU534200 False 1054 lncRNA 0.39 1 7850798 7851851
TU534202 True 622 lncRNA 0.39 1 7851230 7851851
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Neighbor

gene id symbol gene type direction distance location
LOC110525210 LOC106585898 coding upstream 197354 7608126 ~ 7652997 (+)
LOC110525208 LOC106585897 coding upstream 250300 7534540 ~ 7600051 (+)
LOC110525085 LOC106585885 coding upstream 327050 7423076 ~ 7523301 (+)
LOC118964838 LOC106600203 coding upstream 501939 7346075 ~ 7348412 (+)
LOC118964837 LOC106600203 coding upstream 516408 7332211 ~ 7333943 (+)
gak gak coding downstream 15572 7867713 ~ 7909967 (+)
LOC110525087 LOC106585905 coding downstream 61366 7913507 ~ 7954724 (+)
lifra LOC106585909 coding downstream 1059211 8911352 ~ 8936882 (+)
spef2 LOC106585910 coding downstream 1084941 8937082 ~ 8984264 (+)
slc1a3a LOC106585918 coding downstream 1170302 9022443 ~ 9056766 (+)
G469842 LOC106585890 non-coding upstream 1014 7844428 ~ 7849337 (+)
G469847 NA non-coding upstream 14526 7833634 ~ 7835825 (+)
G469845 NA non-coding upstream 19162 7830970 ~ 7831189 (+)
G469844 NA non-coding upstream 19406 7830527 ~ 7830945 (+)
G469838 NA non-coding upstream 28322 7821725 ~ 7822029 (+)
G469856 wdr31 non-coding downstream 3011 7855152 ~ 7858411 (+)
G469871 NA non-coding downstream 31758 7883899 ~ 7884202 (+)
G469877 NA non-coding downstream 58417 7910558 ~ 7910781 (+)
G469878 NA non-coding downstream 58705 7910846 ~ 7911051 (+)
G469879 NA non-coding downstream 59655 7911796 ~ 7911996 (+)
G469048 NA other upstream 497773 7352186 ~ 7352578 (+)
ccl19a.1 LOC106585878 other upstream 1108858 6719880 ~ 6741493 (+)
ccl19a.2 LOC106585882 other upstream 1137314 6710688 ~ 6713091 (+)
G468887 sdf2l other upstream 1175964 6672508 ~ 6674387 (+)
G470292 NA other downstream 361139 8213280 ~ 8217274 (+)
G470599 NA other downstream 957832 8809973 ~ 8810943 (+)
G470770 NA other downstream 1371210 9223351 ~ 9225513 (+)
LOC110525088 LOC106585913 other downstream 1416237 9228570 ~ 9273994 (+)
G472364 NA other downstream 2428165 10280306 ~ 10281123 (+)

Expression

G469853 Expression in all Baseline Samples

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G469853 Expression in each Bioproject

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G469853 Expression in each Sample
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Co-expression Network