G470725


Basic Information

Item Value
gene id G470725
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 9125134 ~ 9125570 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU535178
atatcatcaaccatgtgtagttaactagtgattatgattgattgattgttttttttataagataagtttaatgctagctagcaacttacattggcttactgcattcgcgtaacaggcagtctccttgtggagtgcaacgagagaggggcaggttgttattgcgttggactcgtTAACTGTATGGTTGCAAGATTGggtcccctgagctgacaaggtgaaaatctgtcgttctgcccctgaacaaggcagttaacccaccattcctaggccgtcattgaaaataagaatgtgttcttaactgacttgcctagttaaataaaggtataaacttgaaatcggccctaattaatcggccattccgattaatcggtcgacctctaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU535178 True 381 lncRNA 0.41 2 9125134 9125570

Neighbor

gene id symbol gene type direction distance location
nipbla LOC105014587 coding upstream 6278 9076197 ~ 9118856 (+)
slc1a3a LOC106585918 coding upstream 68368 9022443 ~ 9056766 (+)
spef2 LOC106585910 coding upstream 140870 8937082 ~ 8984264 (+)
lifra LOC106585909 coding upstream 188252 8911352 ~ 8936882 (+)
LOC110525087 LOC106585905 coding upstream 1170410 7913507 ~ 7954724 (+)
LOC110525222 ndc80 coding downstream 15942 9141512 ~ 9163818 (+)
LOC110525088 LOC106585913 coding downstream 103000 9228570 ~ 9273994 (+)
opn4xb opn4x1a coding downstream 190238 9315808 ~ 9345530 (+)
pdlim5a pdlim5 coding downstream 225576 9351146 ~ 9477870 (+)
bmpr1ba bmpr1b coding downstream 352537 9478107 ~ 9635081 (+)
G470721 NA non-coding upstream 10664 9114041 ~ 9114470 (+)
G470712 NA non-coding upstream 55890 9068946 ~ 9069244 (+)
G470705 NA non-coding upstream 74693 9049130 ~ 9050441 (+)
G470680 NA non-coding upstream 139324 8985589 ~ 8985810 (+)
G470678 NA non-coding upstream 142735 8981328 ~ 8982399 (+)
G470737 NA non-coding downstream 43999 9169569 ~ 9169871 (+)
G470780 NA non-coding downstream 117924 9243494 ~ 9244846 (+)
G471359 NA non-coding downstream 149454 9275024 ~ 9275684 (+)
G471363 NA non-coding downstream 151120 9276690 ~ 9276901 (+)
G470599 NA other upstream 314191 8809973 ~ 8810943 (+)
G470292 NA other upstream 907860 8213280 ~ 8217274 (+)
LOC110525210 LOC106585898 other upstream 1481344 7608126 ~ 7652997 (+)
G469048 NA other upstream 1772556 7352186 ~ 7352578 (+)
ccl19a.1 LOC106585878 other upstream 2383641 6719880 ~ 6741493 (+)
G470770 NA other downstream 97781 9223351 ~ 9225513 (+)
G472364 NA other downstream 1154736 10280306 ~ 10281123 (+)
G473070 NA other downstream 2152768 11278338 ~ 11279265 (+)
G474321 NA other downstream 3062718 12188288 ~ 12190572 (+)

Expression


Co-expression Network