XLOC_024086 (sigirr)


Basic Information

Item Value
gene id XLOC_024086
gene name sigirr
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 22107643 ~ 22146309 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047782
GTCTTTGTTTCACCGCCGAAGAGAGTCTGTCAGCTTCATGACTCAAACTGTTTTACAGAGACAGTCGGTCGTGAAGGGATTTATCTGAGGGCTGCAATGTGGCGCTGTCACTTCATTCTCTTCCTGACATGTCTCGCGAACTCTCATTCTGCAGATTCCCTTTGTGGCAGCTCTCCAGAGTTCAAGCATGATCGAACACAGTCAGTGTCGAGTACGCTTGGTCACAGTGTGGTCCTCACCTGCACGGCCTCCATGGGTTTGAACGGAACAGATTTAGATTGTGAAGACCACCCGGAGTGGATGAAAGACGGCTTACAGCTCACAAACCTCACAATTTATCCTCAAAATAGTAAAGAATGGTATACTGATGATGAGGGTCGCATGGAAAGCAGTGAATTAACTCTAACCCTGCGAGATCGGGCTGATTTTGGAGTGTATTACTGCATAGTGAGGAACAGCACAGCACAATTCACCGTGAAGGAATATAAGTCCCCCAGTCACACAGGAGCAGTGGTGGCTTCAGTGGTTATGTTGGTTGTACTCGCTCTCGCAGCGGTGGTCTATTCCAAGTGCAGACTCAACTTTAAACTGTGGTATAAGAATATTTACGGAGAGTATGAGATCAACGATGGTAAAATGTATGATGCCTACATCTCGTATGTCAACAATGAGAATGACAGGAAGTTTGTCAATTTTATCCTGAAGCCACATTTGGAGAACAAGTACAGTCATAAGCTGTTGCTCAATGACACAAACATCCTTCCTGGAGCTGAGCCGTCAGCTGAGCTGCTGATGAACATAAGCCGATGTCGAAGGTTGATTGTGGTTCTCTCTCAGTCATACCTGGAGCAGGAGTGGTGCACTACCAATTTTAGACAGGGTTTGTGGCACCTGATCGAGCTGTCAAGGAAGCCCATTTTCATTATATTTCAGTCCCAGCAGAAGCAAATAAGCCAGGACATCAGTCAGCAGCTGAGACAACACCAGCCTTGTATCACTATGATCACCTGGGGCGCACATTCCATGACTCCTTCTTCAGGGTTCTGGAAGGAACTTGCACTGGTAATGCCACGTAAGGTTACGTTTCACAGGGAATCTGCAGGTGATCCACAGACTTTGTTACAGGGTGATAAAGCTCCCATGCTCACCCAGCAGCCTGATTACCTGGACTGCAGACTGGACCCCGATCCGGCAGGAGACCTGGGTTTGCGTTTGCCCATCTACAAGACCCTTCCCACCAAAGCTCCGGTGCTTCCTGCGGCTCCTGGCCCGACAGGTGAAGCAAAACCTTCAGAGATAGATGTGTCTGACCTTGGTTTGAGGAACTACTCTGCCCGCAGAGACTTTTACTGCCTGGTCACGGATGATGATTTATGAGACACACTCCTGTTCCTTCATGCACTTTAAAGTCACTTCCCCCCAATGATTTCTTGTTACTGACACTTGTTGCTGCGTCCAAAATTGCCTACTAttcagtatgttctgcatttgattttaaatatacTACTcaaccgttagaaaagtatgttgcatacagtatgaatgtgagcggtatgaatggaactcggatgtaCTACGTGTCCACCCTTTTGTGATCATCAAATGACCTACTCGCGTTAGTTCGCTTGTCTCCCATCAAAGAGCTTAAATCACCAAGAGGTTAccctcaatagaacgttccattgcaacagcagcgcccagcaacagccagGCGATTCCGGCATTTTGGaatgaaagcgatcggctgtccattggatcttattgcaaccagctgctttgtttatttatttattcatttcaaagAGCATTATAGCCGAGATACAACCTggaagacgacaatacaacacttactatcacaatcatcagcacttttaatagtttattttacagacttataatacgctgttgttctattggaattttcattcaaAAATGGCTGCCGCGGCATcttgtggctgtttcccaaattgcactagtgtcgcctcttggtgattctatgctctttgctcccattcatgaattctatCTCAGGgaatcatgggatagcatagcgtcCATCTGATGTGttcttcagaatctcgccggaaataGTAGATCATCTTTTGTTTTTCGAATTCTgaaaattcggacatactactcagctcgcatactgtttttagcgcactacatagtatggaagtatgcgattttggacACAGCCTTACATTTAGTTACTTTATCTACACCTATACAATTTTACATGCACACTTTTTAGGCTTTAATGCAAATGGTTTAATAGCATTTCATGTACAGTTATATGGAGTATTCACTGTATACTTTagtaaattagatttttgtttttttggggtgTGATCTATGccaatttgtttttaacagatttttttactattacataaacaaaaaaaagtataaaaaatatgttacatcaaaacaaaaatatatgctGAAATAGATGGTAGCATTGTAGTTTTATATTATGCTAGCCTTTGATGTTTTAGTCTATATCTTAGTGGATTTACTGTCATCTCAGATGAGTGAAAGTTTTTGCAGGGTTAACCAGTCAAACAAAACGAGAAGAACAACATAAAGACACAATGAAATAGTTAAAGGTGTCCATAAATCCAGCTAAGACTGTGTCTTGTGTACAGATCAGAGGACAGGCAGAAATTTCAGATGAGCaggtaaaaactaaaaatatctaATAGGAAAGAATTATTAATATGGTTATGTCATTTACTGTTTGGAATCCCAGTAAACATGTTGAGCCTCGAG
>TCONS_00047783
AGACCTCCTAATTTTGCGAATGAATGATGTTGTTTACGAcctataaaatgttttcaaactttGCATAATAATTTGGGACAGTGCTTTttgagtttaaattttttttttaaataaatactgttatCATTGGAGGTTTGttcaataacattttaattataccCTTACGGTTGGAGTATATTGATTGTCATTTGCATCATTAGGAAAATCAGAGAAAGatattatttgtataataatttGGATTGCAGTGTACATTGTACATTTCTGTATCATTCATTTTtatccttaaaaataaataaagtgtttattcTGTGTTTTGAGGGCTTAATATTGTAGAAATTAGTTGTTGTTATTTCATATCCACAGAGTCCCCCAGTCACACAGGAGCAGTGGTGGCTTCAGTGGTTATGTTGGTTGTACTCGCTCTCGCAGCGGTGGTCTATTCCAAGTGCAGACTCAACTTTAAACTGTGGTATAAGAATATTTACGGAGAGTATGAGATCAACGATGGTAAAATGTATGATGCCTACATCTCGTATGTCAACAATGAGAATGACAGGAAGTTTGTCAATTTTATCCTGAAGCCACATTTGGAGAACAAGTACAGTCATAAGCTGTTGCTCAATGACACAAACATCCTTCCTGGAGCTGAGCCG

Function

symbol description
sigirr Acts upstream of or within negative regulation of inflammatory response. Located in cell surface. Is expressed in brain; gill; integument; liver; and pleuroperitoneal region. Orthologous to human SIGIRR (single Ig and TIR domain containing).

GO:

id name namespace
GO:0050728 negative regulation of inflammatory response biological_process
GO:0007165 signal transduction biological_process
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
ko04050 Cytokine receptors

ZFIN:

id description
ZDB-GENE-080303-3 Acts upstream of or within negative regulation of inflammatory response. Located in cell surface. Is expressed in brain; gill; integument; liver; and pleuroperitoneal region. Orthologous to human SIGIRR (single Ig and TIR domain containing).

Ensembl:

ensembl_id ENSDARG00000062204

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047782 False 2772 mRNA 0.42 9 22107643 22146309
TCONS_00047783 True 653 lncRNA 0.34 3 22131858 22133302

Neighbor

gene id symbol gene type direction distance location
XLOC_024085 si:dkey-217l24.1 coding upstream 11806 22017182 ~ 22095837 (+)
XLOC_024084 dynlrb2 coding upstream 198999 21895182 ~ 21908644 (+)
XLOC_024083 ckmt1 coding upstream 260090 21829777 ~ 21847553 (+)
XLOC_024082 znf277 coding upstream 363721 21716263 ~ 21743922 (+)
XLOC_024081 si:dkey-81e3.2 coding upstream 583700 21517551 ~ 21523943 (+)
XLOC_024087 hexa coding downstream 70414 22216723 ~ 22241312 (+)
XLOC_024088 nr2e3 coding downstream 128333 22274642 ~ 22278655 (+)
XLOC_024089 stoml1 coding downstream 135132 22281441 ~ 22292901 (+)
XLOC_024090 cyp11a2 coding downstream 150357 22296666 ~ 22311542 (+)
XLOC_024091 cyp11a1 coding downstream 173631 22319940 ~ 22335283 (+)
XLOC_023973 CR762411.1 misc upstream 6889534 15217824 ~ 15218109 (+)
XLOC_024080 NA non-coding upstream 607747 21498287 ~ 21499896 (+)
XLOC_024079 NA non-coding upstream 762970 21324588 ~ 21344673 (+)
XLOC_024074 NA non-coding upstream 1015068 21092243 ~ 21092575 (+)
XLOC_024072 NA non-coding upstream 1109028 20997679 ~ 20998615 (+)
XLOC_024071 NA non-coding upstream 1148061 20959183 ~ 20959582 (+)
XLOC_024092 CR759863.2 non-coding downstream 343380 22489689 ~ 22491864 (+)
XLOC_024093 NA non-coding downstream 345684 22491993 ~ 22497122 (+)
XLOC_024098 NA non-coding downstream 830280 22976589 ~ 22980625 (+)
XLOC_024099 CR396595.3 non-coding downstream 918318 23064627 ~ 23112585 (+)
XLOC_024100 CR396595.4 non-coding downstream 982389 23128698 ~ 23131139 (+)

Expression


Co-expression Network