XLOC_024087 (hexa)


Basic Information

Item Value
gene id XLOC_024087
gene name hexa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 22216723 ~ 22241312 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047784
AGCTCGGgtcagctgaacaacagaaacaCTGGTGCTCAGTCATATGATGCGCGTTTTTTACAGTTTCAGCGCATTTTCAGTTTTCATTGTGCCGCTTGAACCTGCTGTCCGACAACACGCAGAAACACGGCTACAGTCCCCGTAACATGGCCAGGATCGCAAAGTCTCCTCGTTTCTGCTGCTGCCTGCTGTCAGTTGTGTTTGTCAGTCAGTTTGTGGAGCGGGTGTGTGGAGTTTGGCCGTTGCCTCAGGAGATCCAACAGTCTGCTGAAAGCTCCGGGCTGAGCCCGCAGCTCTTCACTTTCACATACAGCCAGGACTCCGCTGCACAGGCGGGATGCTCCGTGCTGGACACTGCCTTCAAAAGATACTTCTCCATCATATTCCCCGACTTTACTAAAGATGCACTTCATGACATGTGGTTGGAGCCAAAAGCCTTCGTTCTGTCAGTGAGTGTCAAAACCAGAGGATGTGACGGTTACCCTGACGAAGATTCAGATGAAAGCTATAACCTGAGTGTGTCAGAGGGCCAGGCTGTGCTGAGATCAGTGACTGTATGGGGCGCTTTGAGAGGTCTGGAGTCCTTCAGTCAGCTTGTGTACCGCGATGATTATGGCGCTTATTTTGTCAACAAGACGGAGATCGTAGACTTCCCACGTTTTGCATTTCGAGGACTTTTGTTGGACACTTCTAGGCATTATTTACCCCTCCATGCTATCTTGAAGACCTTGGATGCCATGGCATATAGTAAATTTAATGTCTTCCACTGGCACATTGTGGACGACCCTTCCTTTCCGTATCAGAGCCGAACTTTTCCTGACCTCAGTAAAAAGggaGCTTTTCATCCATTTACTCATATCTACACACAGTCAGATGTGATGAGAGTGATTGAACATGCCAGGATGAGGGGTATTAGAGTCGTGCCGGAGTTTGACTCACCTGGACACACTCAATCATGGGGAAaagGCCAGCCAGATCTCTTGACCCCCTGTTATAAAGGCAGTAAGCCTTCTGGAACGTACGGTCCTGTTGATCCAACAGTGGACACCACCTATAGGTTCATGGAGCGTCTCCTGAAGGAGGTGAAGTTCGTCTTTCCAGACTCGTATGTTCATTTAGGAGGGGATGAGGTCAGCTTTGCTTgctggcAGTCCAATCCCAGTGTAGGAAAGTTTATGGAAAAGATGGGATTTGGGAGGGATTTTACAAAACTGGAGTCATTCTATATGGAGAGCATAATGAACATAACGGCCGCTCTCAACAAAACCTCCATTGTTTGGCAGGACGTGTTTGACTACCATGAACGAATTCCACAGGGCACGGTTCTGGAGATCTGGAAGGGTGAAACTTACCAGACCGAACTGAGTAAGATGACCAAGGCTGGGCACAGGGTTCTGCTCTCTGCCCCCTGGTACATCAACCACATCACCTACGGCCAGGACTGGCGCAACTCCTACGCCGTGCAGCCGCAGAATTTCTCCGGGACAGAGGAGCAGAAAAAGTTGGTGATTGGTGGAGAGGTCGCCATGTGGGGAGAATATGTTGATGCCACCAATCTAAACCCACGTCTATGGCCAAGAGCTTGTGCTGCTGCTGAGAGATTGTGGAGCAATGAAGAAAAGACTCTGAATGCAGATCTGGCCTTCCCTCGCCTGGAAGAGTTTCGCTGCGAACTTGTAAGGCGAGGGATTCAAGCGGAGCCTCTGTTTGTCGGTCACTGTAAACACGAGTTTAATGGTCTGTAAGTACAGTAAACCGAGCAAACACAATGATAAAACTCAACTGACTAAAACTGACGAGTTGAGACACTGGAAGGCATCTTTAAACTTGCACATTATAATGTTTCTAAGAAATGAAATGCGCATAATGAAAGCTAAAAATACCTATTTTGTTAATAAAGATCTATTCAAGAATG
>TCONS_00047785
GATGCCATGGCATATAGTAAATTTAATGTCTTCCACTGGCACATTGTGGACGACCCTTCCTTTCCGTATCAGAGCCGAACTTTTCCTGACCTCAGTAAAAAGggaGCTTTTCATCCATTTACTCATATCTACACACAGTCAGATGTGATGAGAGTGATTGAACATGCCAGGATGAGGGGTATTAGAGTCGTGCCGGAGTTTGACTCACCTGGACACACTCAATCATGGGGAAaagGCCAGCCAGATCTCTTGACCCCCTGTTATAAAGGCAGTAAGCCTTCTGGAACGTACGGTCCTGTTGATCCAACAGTGGACACCACCTATAGGTTCATGGAGCGTCTCCTGAAGGAGgcAGTCCAATCCCAGTGTAGGAAAGTTTATGGAAAAGATGGGATTTGGGAGGGATTTTACAAAACTGGAGTCATTCTATATGGAGAGCATAATGAACATAACGGCCGCTCTCAACAAAACCTCCATTGTTTGGCAGGACGTGTTTGACTACCATGAACGACCCAGATCTCAGTATGTTGTGGAGGTCTGGAAGCAGGGATGTTACCTGTGCGAGATGCGCCGGGTCACTAAAGCAGGGTTAAAAGTGATCTTGGCGGCCCCGTTTTACCTGGATCTGCCCATTCCCACTCAGAACTGGGCCCGATACTATGGAGTCCGGCCCTTAGCCTTCAGGGATTCCACAGGGCACGGTTCTGGAGATCTGGAAGGGTGAAACTTACCAGACCGAACTGAGTAAGATGACCAAGGCTGGGCACAGGGTTCTGCTCTCTGCCCCCTGGTACATCAACCACATCACCTACGGCCAGGACTGGCGCAACTCCTACGCCGTGCAGCCGCAGAATTTCTCCGGGACAGAGGAGCAGAAAAAGTTGGTGATTGGTGGAGAGGTCGCCATGTGGGGAGAATATGTTGATGCCACCAATCTAAACCCACGTCTATGGCCAAGAGCTTGTGCTGCTGCTGAGAGATTGTGGAGCAATGAAGAAAAGACTCTGAATGCAGATCTGGCCTTCCCTCGCCTGGAAGAGTTTCGCTGCGAACTTGTAAG

Function

symbol description
hexa Predicted to enable N-acetyl-beta-D-galactosaminidase activity and beta-N-acetylhexosaminidase activity. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in lysosome. Is expressed in several structures, including axis; lens placode; optic vesicle; polster; and visual system. Human ortholog(s) of this gene implicated in Tay-Sachs disease. Orthologous to human HEXA (hexosaminidase subunit alpha).

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005575 cellular_component cellular_component
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0004563 beta-N-acetylhexosaminidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function
GO:0102148 N-acetyl-beta-D-galactosaminidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-283 Predicted to enable N-acetyl-beta-D-galactosaminidase activity and beta-N-acetylhexosaminidase activity. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in lysosome. Is expressed in several structures, including axis; lens placode; optic vesicle; polster; and visual system. Human ortholog(s) of this gene implicated in Tay-Sachs disease. Orthologous to human HEXA (hexosaminidase subunit alpha).

Ensembl:

ensembl_id ENSDARG00000052113

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047784 False 1915 mRNA 0.48 14 22216723 22241312
TCONS_00047785 True 1060 processed_transcript 0.50 9 22225802 22238992

Neighbor

gene id symbol gene type direction distance location
XLOC_024086 sigirr coding upstream 70414 22107643 ~ 22146309 (+)
XLOC_024085 si:dkey-217l24.1 coding upstream 120886 22017182 ~ 22095837 (+)
XLOC_024084 dynlrb2 coding upstream 308079 21895182 ~ 21908644 (+)
XLOC_024083 ckmt1 coding upstream 369170 21829777 ~ 21847553 (+)
XLOC_024082 znf277 coding upstream 472801 21716263 ~ 21743922 (+)
XLOC_024088 nr2e3 coding downstream 33330 22274642 ~ 22278655 (+)
XLOC_024089 stoml1 coding downstream 40129 22281441 ~ 22292901 (+)
XLOC_024090 cyp11a2 coding downstream 55354 22296666 ~ 22311542 (+)
XLOC_024091 cyp11a1 coding downstream 78628 22319940 ~ 22335283 (+)
XLOC_024092 CR759863.2 coding downstream 248377 22489689 ~ 22491864 (+)
XLOC_023973 CR762411.1 misc upstream 6998614 15217824 ~ 15218109 (+)
XLOC_024080 NA non-coding upstream 716827 21498287 ~ 21499896 (+)
XLOC_024079 NA non-coding upstream 872050 21324588 ~ 21344673 (+)
XLOC_024074 NA non-coding upstream 1124148 21092243 ~ 21092575 (+)
XLOC_024072 NA non-coding upstream 1218108 20997679 ~ 20998615 (+)
XLOC_024071 NA non-coding upstream 1257141 20959183 ~ 20959582 (+)
XLOC_024093 NA non-coding downstream 250681 22491993 ~ 22497122 (+)
XLOC_024098 NA non-coding downstream 735277 22976589 ~ 22980625 (+)
XLOC_024099 CR396595.3 non-coding downstream 823315 23064627 ~ 23112585 (+)
XLOC_024100 CR396595.4 non-coding downstream 887386 23128698 ~ 23131139 (+)

Expression


Co-expression Network