XLOC_024093


Basic Information

Item Value
gene id XLOC_024093
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 22491993 ~ 22497122 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049042
AAAACATGCAAGTACTGTGGAAAGAAGGTTAAACAGAAGCGAAACGTtgaggaccaaaaaaaaaaatttgatgatCTGTGGGCtaccaaattaaaaaaagatggcAATACATGCAAAATAATGAATTCTGTGGACTTACtagtatgttttatttaatttatttttgtttcattaaagtaactttttttgaTAAAGACAAAAGGCAGATTAACTCTTattcaaaacattttgtttttctcttctcAGCTCCATAAGTTGGAATTGCTTGGTGTGTCACCCATCCTTTTTATTTCTACACAACGAGGCCAGCACCGTACTACCAAAATATTTGCTAAAAACAAATACCTTCAGAGCCATCCCTCATTACAAGTGATGCAGAAACTTTATGAGGCTGTGATAAGAgGGAACAACTCTGCCTCAAAGTCTGTGGACCCCACTTCCGTGAACCCCAGCTCTGTGTACGTGCACC
>TCONS_00049236
ttttttacctctcttCAGGGAACAACTCTGCCTCAAAGTCTGTGGACCCCACTTCCGTGAACCCCAGCTCTGTGTACGTGCACCCCACCTCTACCTCTTTGGACCCTAACTCTGTCTCTGTGCACCCCATCTCCGCCTCTCCGGACCCTAACTCTGTCTCTGTGCACCCCACCTCCTCCTCTCTGGACCCTAACTCTGTCTCTGTGCACCCCACCTCCGCCTCTCTGGACCCTAACTCTGTCTCTGTGCACCCCACCTCCTCCTCTCTGGACCCTAACTCTGTCTCTGTGCACCCCACCTCCGCCTCTCTGGACCCTAACTCTGTCTCTGTGCACCCCACCTCCGCCTCTCTGGACCCTAACTCTGTCTCTGTGCACCCCACCTCCGCCTCTCTGGACCCTAACTCTGTCTCTGTGCACCCCATCTCCGCCTCTCCGGACCCTAACTCTGTCTCTGTGCACCCCACCTCCTCCTCTCTGGACCCTAACTCTGTCTCTGTGCACCCCACCTCCGCCTCTCTGGACCCTAACTCTGTCTCTGTGCACCCCACCTCCGCCTCTCTGGACCCTAACTCTGTCTCTGTGCACCCCACATCCTCCTCTCTGGACCCTAACTCTGTCTCTGTGCACCCCATCTCCGCCTCTCCGGACCCTAACTCTGTCTCTGTGCACCCCACCTCCTCCTCTCTGGCCCCTAACTCTGTGTCTGTCAACCACACCTCCGCCTCTCTGGACCTCACCTCCGCCTCTCTGGATCCCACCCCCACCTCTCTGGACCCCACCTCTGTGTCTTTGAATCCCACCTCTGCCTCTCTGGATCCCACCTCCACCTCTCTGGACCCCACTTCTGTGTTTGTGAACCTCACCTCAGTGTCTGTGAACCCCACCCCCACGTCCGTCTTCTTAGACCCCACCTCCATCAACCCAACCTCCGCCGCTGTTACATgccaattaaaaaagaaaaggaacCAAACACATAGTGGTaattctattgttttacattttttgtaatttttaaactACACTGCACTTTTTAACGCTTTGCGTCTTAAGATTAAGTTtatatttaagtaaataataataattttagaaagGTTAACCCGTTTTGTTACTTTTTAagtttgttgtaaataatgtttctaTTACATTACAGAATGCTCACATAAAAGCCAGGACGTGTACAATGGAGTGGttgtgagagagagagttagGGAGGTTGGTcagaataatgaaaaaaaatggaagaaaattATTCCTCTTTAAAATTTACAAATGTGTTATGTTACACATTAATTATTACAGTAAAACAGTAAGTTAATAGTACAGTAAATTGCTCAACTATATTATTGTTAGTTGAAGAGAGTCAGTAACATAAATTAGGTTCTTTATGCTGTTTAACTTGAAAATGTAATGATGTAAATTAGGTCCTGatgcatttttttctgtgtgttcttTTAAGGGAAGAAAAGAATTTCTGTTTAGGTGGCAGCCCTGTGCATCCTGGTAAGTAGAGACATATTTAGTATTTAATGTAACCTTACTCTTCTCCTAAGAGAACAAAAAATTTGTTGATGTTTAAAGAATTAtcgaataaaattaaatactggtcattaatataacattaatagtGTACAaggttttcaaaaattaaaaacaaacaaattgtgtgtgtatgtatgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatttaataaatatatttatttatatacttacatacatatatatatatatacttacatacatacatatacatatatatacatatatatttatatatatatacatacatacatacatacatacatatatatatatatatatatatatatatatatatgtccgtgtgtgtgtatgtatatgtatgtatctttttttttattacatttttgtgttAAATGGTAGAAATTCACATGATTTTACCATTTGTACCTTTTTCAACTGGTAATAAAGGCCCACTCTgtaaattagttattttaaattagttacaatttatttatttaaatcgtAGGTCATCACTTTCAGCAAAACTGCCAAGTTCTCTGGTATATATGCggcagatgcccatccagctgcgaCACAGCTCTGCAAGCTGCCCTTGCTTGTTATCATTGTCatacaaaattaatttatttcttttttatgtttttatttatttattaacattacttATATGTATCCATGTATCTAATTTATCTGTACTATTCCAAATATCAATGAAATACTAATTGTAGTTCCTAATTcatatacataatatattactgtacatataaaaaattacatataaaaatagTGACAACAAAGTTTTTACCGGATACTGTAGCTTGCAATCTCATacaaaaaagtgatgttttgcaagCCATTGCAGCATATGTAATGTTGTTTAAATTTCAAGCAAAGTTAACAGTTAATTTTACTGTAGTACAAGAATTTATTTAAGTATAAACAGATTAACAGCGCTGTACAAAATCATATTTGAGTATTTTACTTATTTGACTGACAGAATTATAGTTATATAGAATCAATTAGATAAAAAAGGTTTTGTGTGTCTGGATGAAATTTtgatgctttacacacacacacacacacacacacacacacacacacacacagacacacacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacttttccaaaaaggaaaataaatagtgttaaaaaaatGCTGTCTGTATTTTTCGTTCATAGCGGCAAGAAGTGGAGGAGCACATGGGTGTCTGAGGATGCTGTACAGTAGTGGTG

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0048468 cell development biological_process
GO:0045445 myoblast differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0051153 regulation of striated muscle cell differentiation biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0045661 regulation of myoblast differentiation biological_process
GO:0045663 positive regulation of myoblast differentiation biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049042 False 469 lncRNA 0.37 2 22491993 22494305
TCONS_00049236 True 2901 lncRNA 0.38 1 22494222 22497122

Neighbor

gene id symbol gene type direction distance location
XLOC_024092 CR759863.2 coding upstream 129 22489689 ~ 22491864 (+)
XLOC_024091 cyp11a1 coding upstream 156710 22319940 ~ 22335283 (+)
XLOC_024090 cyp11a2 coding upstream 180451 22296666 ~ 22311542 (+)
XLOC_024089 stoml1 coding upstream 199092 22281441 ~ 22292901 (+)
XLOC_024088 nr2e3 coding upstream 213338 22274642 ~ 22278655 (+)
XLOC_024094 stra6 coding downstream 74353 22571475 ~ 22634675 (+)
XLOC_024095 ush1c coding downstream 146832 22643954 ~ 22704233 (+)
XLOC_024096 abcc8 coding downstream 222730 22719852 ~ 22849186 (+)
XLOC_024097 kcnj11 coding downstream 356596 22853718 ~ 22854863 (+)
XLOC_024098 NA coding downstream 479467 22976589 ~ 22980625 (+)
XLOC_023973 CR762411.1 misc upstream 7273884 15217824 ~ 15218109 (+)
XLOC_024080 NA non-coding upstream 992097 21498287 ~ 21499896 (+)
XLOC_024079 NA non-coding upstream 1147320 21324588 ~ 21344673 (+)
XLOC_024074 NA non-coding upstream 1399418 21092243 ~ 21092575 (+)
XLOC_024072 NA non-coding upstream 1493378 20997679 ~ 20998615 (+)
XLOC_024099 CR396595.3 non-coding downstream 567505 23064627 ~ 23112585 (+)
XLOC_024100 CR396595.4 non-coding downstream 631576 23128698 ~ 23131139 (+)
XLOC_024101 CR354549.6 non-coding downstream 643402 23140524 ~ 23146581 (+)
XLOC_024102 CR354549.8 non-coding downstream 650480 23147602 ~ 23151051 (+)

Expression


Co-expression Network