G472800


Basic Information

Item Value
gene id G472800
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 10806024 ~ 10806342 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU537541
ggttaggtgattcattgaggtaatatgtatatgtagggtttggttaggtgattcattgaggtaatatgtatatgtagggtttggttaggtgattcattgaggtaatatgtatatgtagggtTTCTTTAGgtgattcattgaggtaatatgtatatgtagggtttggttaggtgattcattgaggtaatatgtatatgtagggtttggtttggttaggtgattcattgaggtaatatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU537541 True 237 lncRNA 0.34 2 10806024 10806342

Neighbor

gene id symbol gene type direction distance location
LOC110525250 hpgds coding upstream 296895 10497758 ~ 10509129 (+)
prf1.5 LOC106585834 coding upstream 321689 10480130 ~ 10484335 (+)
mpeg1.1 mpeg1 coding upstream 326804 10476333 ~ 10479220 (+)
LOC110525245 LOC106585833 coding upstream 345379 10459637 ~ 10460645 (+)
aptx LOC100136186 coding upstream 419679 10384908 ~ 10386345 (+)
LOC110525261 ap3s1 coding downstream 731935 11538277 ~ 11561607 (+)
commd10 comda coding downstream 756125 11562467 ~ 11604688 (+)
LOC118965115 NA coding downstream 938327 11744669 ~ 11744803 (+)
LOC110525262 dmxl1 coding downstream 939671 11746013 ~ 11809089 (+)
LOC110525265 LOC106585816 coding downstream 1018017 11824359 ~ 11837872 (+)
G472725 NA non-coding upstream 146463 10657951 ~ 10659561 (+)
G472724 grid2 non-coding upstream 147227 10654937 ~ 10658797 (+)
G472675 NA non-coding upstream 218785 10585311 ~ 10587239 (+)
G472669 NA non-coding upstream 227643 10578143 ~ 10578381 (+)
G472487 NA non-coding upstream 314619 10491193 ~ 10491405 (+)
G472811 NA non-coding downstream 18239 10824581 ~ 10829685 (+)
G473018 NA non-coding downstream 366835 11173177 ~ 11173692 (+)
G473046 NA non-coding downstream 415851 11222193 ~ 11223024 (+)
G473047 NA non-coding downstream 423147 11229489 ~ 11285481 (+)
G473073 NA non-coding downstream 491745 11298087 ~ 11298317 (+)
G472364 NA other upstream 524901 10280306 ~ 10281123 (+)
LOC110525088 LOC106585913 other upstream 1532071 9228570 ~ 9273994 (+)
G470770 NA other upstream 1580511 9223351 ~ 9225513 (+)
G470599 NA other upstream 1995081 8809973 ~ 8810943 (+)
G470292 NA other upstream 2588750 8213280 ~ 8217274 (+)
G473070 NA other downstream 471996 11278338 ~ 11279265 (+)
G474321 NA other downstream 1381946 12188288 ~ 12190572 (+)
G474851 NA other downstream 1697418 12503760 ~ 12504119 (+)
G474949 NA other downstream 1905964 12712306 ~ 12713298 (+)
G475692 NA other downstream 2507337 13313679 ~ 13313969 (+)

Expression


Co-expression Network