G472811


Basic Information

Item Value
gene id G472811
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 10824581 ~ 10829685 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU537553
taacaagtcaatgtgggggggtactggttagtacatgtaggtaggggaaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgggggggtactggttagtacatgtaggtaggggtaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgcgggggtactggttagtacatgtaggtaggggtaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgggggggtactggttagtacatgtaggtaggggtaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgggggggtactggttagtacatgtaggtaggggtaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgcgggggtactggttagtacatgtaggtaggggtaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgggggggtactggttagtacatgtaggtaggggtaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgcgggggtactggttagtacatgtaggtaggggtaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgcgggggtactggttagtacatgtaggtaggggtaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgcgggggtactggttagtacatgtaggtaggggaaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgcgggggtactggttagtacatgtaggtaggggaaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgcgggggtactggttagtacatgtaggtaggggtaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgggggggtactggttagtacatgtaggtaggggtaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgggggggtactggttagtacatgtaggtaggggaaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgggggggtactggttagtacatgtaggtaggggtaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgcgggggtactggttagtacatgtaggtaggggtaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgcaggggtactggttagtacatgtaggtaggggaaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgcgggggtactggttagtacatgtaggtaggggtaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgggggggtactggttagtacatgtaggtaggggaaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgggggggtactggttagtacatgtaggtaggggtaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgcggggggtactggttagtacatgtaggtaggggtaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgagggggtactggttagtacatgtaggtaggggtaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgcgggggtactggttagtacatgtaggtaggggtaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgggggggtactggttagtacatgtaggtaagggtaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgggggggtactggttagtacatgtaggtag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU537553 True 2253 lncRNA 0.40 3 10824581 10829685

Neighbor

gene id symbol gene type direction distance location
LOC110525250 hpgds coding upstream 315452 10497758 ~ 10509129 (+)
prf1.5 LOC106585834 coding upstream 340246 10480130 ~ 10484335 (+)
mpeg1.1 mpeg1 coding upstream 345361 10476333 ~ 10479220 (+)
LOC110525245 LOC106585833 coding upstream 363936 10459637 ~ 10460645 (+)
aptx LOC100136186 coding upstream 438236 10384908 ~ 10386345 (+)
LOC110525261 ap3s1 coding downstream 708592 11538277 ~ 11561607 (+)
commd10 comda coding downstream 732782 11562467 ~ 11604688 (+)
LOC118965115 NA coding downstream 914984 11744669 ~ 11744803 (+)
LOC110525262 dmxl1 coding downstream 916328 11746013 ~ 11809089 (+)
LOC110525265 LOC106585816 coding downstream 994674 11824359 ~ 11837872 (+)
G472800 NA non-coding upstream 18239 10806024 ~ 10806342 (+)
G472725 NA non-coding upstream 165020 10657951 ~ 10659561 (+)
G472724 grid2 non-coding upstream 165784 10654937 ~ 10658797 (+)
G472675 NA non-coding upstream 237342 10585311 ~ 10587239 (+)
G472669 NA non-coding upstream 246200 10578143 ~ 10578381 (+)
G473018 NA non-coding downstream 343492 11173177 ~ 11173692 (+)
G473046 NA non-coding downstream 392508 11222193 ~ 11223024 (+)
G473047 NA non-coding downstream 399804 11229489 ~ 11285481 (+)
G473073 NA non-coding downstream 468402 11298087 ~ 11298317 (+)
G473076 NA non-coding downstream 472988 11302673 ~ 11302944 (+)
G472364 NA other upstream 543458 10280306 ~ 10281123 (+)
LOC110525088 LOC106585913 other upstream 1550628 9228570 ~ 9273994 (+)
G470770 NA other upstream 1599068 9223351 ~ 9225513 (+)
G470599 NA other upstream 2013638 8809973 ~ 8810943 (+)
G470292 NA other upstream 2607307 8213280 ~ 8217274 (+)
G473070 NA other downstream 448653 11278338 ~ 11279265 (+)
G474321 NA other downstream 1358603 12188288 ~ 12190572 (+)
G474851 NA other downstream 1674075 12503760 ~ 12504119 (+)
G474949 NA other downstream 1882621 12712306 ~ 12713298 (+)
G475692 NA other downstream 2483994 13313679 ~ 13313969 (+)

Expression


Co-expression Network