G473077


Basic Information

Item Value
gene id G473077
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 11303889 ~ 11304094 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU537836
aactagtaaatggtagcctacagcaaagtgtgtttaaatcatttctaactttttcacaatttctgctagttagtttttgctaccatgtgggttttagcttgcttgagcctgctaacggaggagtgttaattcacctgttacCATGCATGCTTCATTTAAAAAATGcatatcttacaaaggagttgtttaatctaactgcttaactt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU537836 True 206 lncRNA 0.35 1 11303889 11304094

Neighbor

gene id symbol gene type direction distance location
LOC110525250 hpgds coding upstream 794760 10497758 ~ 10509129 (+)
prf1.5 LOC106585834 coding upstream 819554 10480130 ~ 10484335 (+)
mpeg1.1 mpeg1 coding upstream 824669 10476333 ~ 10479220 (+)
LOC110525245 LOC106585833 coding upstream 843244 10459637 ~ 10460645 (+)
aptx LOC100136186 coding upstream 917544 10384908 ~ 10386345 (+)
LOC110525261 ap3s1 coding downstream 234183 11538277 ~ 11561607 (+)
commd10 comda coding downstream 258373 11562467 ~ 11604688 (+)
LOC118965115 NA coding downstream 440575 11744669 ~ 11744803 (+)
LOC110525262 dmxl1 coding downstream 441919 11746013 ~ 11809089 (+)
LOC110525265 LOC106585816 coding downstream 520265 11824359 ~ 11837872 (+)
G473076 NA non-coding upstream 945 11302673 ~ 11302944 (+)
G473073 NA non-coding upstream 5572 11298087 ~ 11298317 (+)
G473047 NA non-coding upstream 18408 11229489 ~ 11285481 (+)
G473046 NA non-coding upstream 80865 11222193 ~ 11223024 (+)
G473018 NA non-coding upstream 130197 11173177 ~ 11173692 (+)
G473079 NA non-coding downstream 2332 11306426 ~ 11306658 (+)
G473080 NA non-coding downstream 2710 11306804 ~ 11307062 (+)
G473088 NA non-coding downstream 11309 11315403 ~ 11315701 (+)
G473114 NA non-coding downstream 60974 11365068 ~ 11366160 (+)
G473115 NA non-coding downstream 62404 11366498 ~ 11367157 (+)
G473070 NA other upstream 24624 11278338 ~ 11279265 (+)
G472364 NA other upstream 1022766 10280306 ~ 10281123 (+)
LOC110525088 LOC106585913 other upstream 2029936 9228570 ~ 9273994 (+)
G470770 NA other upstream 2078376 9223351 ~ 9225513 (+)
G470599 NA other upstream 2492946 8809973 ~ 8810943 (+)
G474321 NA other downstream 884194 12188288 ~ 12190572 (+)
G474851 NA other downstream 1199666 12503760 ~ 12504119 (+)
G474949 NA other downstream 1408212 12712306 ~ 12713298 (+)
G475692 NA other downstream 2009585 13313679 ~ 13313969 (+)
G476234 NA other downstream 2680746 13984840 ~ 13985259 (+)

Expression


Co-expression Network