G473079


Basic Information

Item Value
gene id G473079
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 11306426 ~ 11306658 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU537838
atattccctatatagtgcataactttagaccagaacccttaTAGTGTGGGTTAAACATGCTCCCTGAAGGAGGGGGAAAGGAAAAGGTATTGACCAGCTGCTTGCCTGATTAAGGATCCAGAGTCTTCTGAAGAAAGGTATTGACCAAATGGACAAAACTGACTAAGGATCCAGAGCTTTCTGAAGAAAGGTATTGACCAAATGGACAAAACTGACTAAGGATCCAGAGCTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU537838 True 233 lncRNA 0.42 1 11306426 11306658

Neighbor

gene id symbol gene type direction distance location
LOC110525250 hpgds coding upstream 797297 10497758 ~ 10509129 (+)
prf1.5 LOC106585834 coding upstream 822091 10480130 ~ 10484335 (+)
mpeg1.1 mpeg1 coding upstream 827206 10476333 ~ 10479220 (+)
LOC110525245 LOC106585833 coding upstream 845781 10459637 ~ 10460645 (+)
aptx LOC100136186 coding upstream 920081 10384908 ~ 10386345 (+)
LOC110525261 ap3s1 coding downstream 231619 11538277 ~ 11561607 (+)
commd10 comda coding downstream 255809 11562467 ~ 11604688 (+)
LOC118965115 NA coding downstream 438011 11744669 ~ 11744803 (+)
LOC110525262 dmxl1 coding downstream 439355 11746013 ~ 11809089 (+)
LOC110525265 LOC106585816 coding downstream 517701 11824359 ~ 11837872 (+)
G473077 NA non-coding upstream 2332 11303889 ~ 11304094 (+)
G473076 NA non-coding upstream 3482 11302673 ~ 11302944 (+)
G473073 NA non-coding upstream 8109 11298087 ~ 11298317 (+)
G473047 NA non-coding upstream 20945 11229489 ~ 11285481 (+)
G473046 NA non-coding upstream 83402 11222193 ~ 11223024 (+)
G473080 NA non-coding downstream 146 11306804 ~ 11307062 (+)
G473088 NA non-coding downstream 8745 11315403 ~ 11315701 (+)
G473114 NA non-coding downstream 58410 11365068 ~ 11366160 (+)
G473115 NA non-coding downstream 59840 11366498 ~ 11367157 (+)
G473123 NA non-coding downstream 66536 11373194 ~ 11421657 (+)
G473070 NA other upstream 27161 11278338 ~ 11279265 (+)
G472364 NA other upstream 1025303 10280306 ~ 10281123 (+)
LOC110525088 LOC106585913 other upstream 2032473 9228570 ~ 9273994 (+)
G470770 NA other upstream 2080913 9223351 ~ 9225513 (+)
G470599 NA other upstream 2495483 8809973 ~ 8810943 (+)
G474321 NA other downstream 881630 12188288 ~ 12190572 (+)
G474851 NA other downstream 1197102 12503760 ~ 12504119 (+)
G474949 NA other downstream 1405648 12712306 ~ 12713298 (+)
G475692 NA other downstream 2007021 13313679 ~ 13313969 (+)
G476234 NA other downstream 2678182 13984840 ~ 13985259 (+)

Expression


Co-expression Network