G473158 (pggt1b)


Basic Information

Item Value
gene id G473158
gene name pggt1b
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 11430163 ~ 11440522 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU537939
catgaaactacctctaacttccttcatactgtacgcataaatggtatccacaaattcatctgactctagggaagtagataaagggctatattgcaaaacatttcaaactatccctttaatggcAACCACTTAATCAATACGTTGAACAAGGATGTGTTTCAGGATCAATACCTTGGAGGTGCTGTATGGAACTCCAATGTGTGATGACCCTCGAAACCCACAACGTCCTAAATTGGATtGGTCTTCTGTAGGAATGACTTGTAGTGAGTAGACCCATTCAATCAAGCTGGGCTTGTCTATTACATTAAGAGAATCCAGGACATCAAGACCAGAGAGCGCAAAGAACACAATGGTCAACCTGCTTGTTTCTAATGATGAATATCTCTCTGGTAAAACTTGAAGACATCTTTGAAAGAATCGTACATGTCGATCTTTTAAAAAGTCAATTTGTTCAAATTCGGCAAGAGGGTTCTCTTCTTCCGCCATCTTTGAGTTTGAAACAACTTCCGCGTAAACAGGCTTTGCAACCTTCTTTGTTGcggtttaacggcggttggcatccaacgtttatggtgcattaccgccaccaactggcCTGGGGCGAAAAAAGGAAACCGTACAGGCAAAAAATGGGGAGTTGGGACCTTATTCCACACAAACTGAAAcgtaacaaataaaaaataagtcCCACTTCTTAATAAACAAAATTCCATATCTCCCTTCTCAGGCTGTGGGGAATGAG

Function

symbol description
pggt1b Predicted to enable protein geranylgeranyltransferase activity. Predicted to contribute to CAAX-protein geranylgeranyltransferase activity. Acts upstream of or within blood vessel maturation. Predicted to be part of CAAX-protein geranylgeranyltransferase complex. Orthologous to human PGGT1B (protein geranylgeranyltransferase type I subunit beta).

NR:

description
geranylgeranyl transferase type-1 subunit beta

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU537939 True 742 lncRNA 0.41 3 11430163 11440522

Neighbor

gene id symbol gene type direction distance location
LOC110525250 hpgds coding upstream 921034 10497758 ~ 10509129 (+)
prf1.5 LOC106585834 coding upstream 945828 10480130 ~ 10484335 (+)
mpeg1.1 mpeg1 coding upstream 950943 10476333 ~ 10479220 (+)
LOC110525245 LOC106585833 coding upstream 969518 10459637 ~ 10460645 (+)
aptx LOC100136186 coding upstream 1043818 10384908 ~ 10386345 (+)
LOC110525261 ap3s1 coding downstream 97755 11538277 ~ 11561607 (+)
commd10 comda coding downstream 121945 11562467 ~ 11604688 (+)
LOC118965115 NA coding downstream 304147 11744669 ~ 11744803 (+)
LOC110525262 dmxl1 coding downstream 305491 11746013 ~ 11809089 (+)
LOC110525265 LOC106585816 coding downstream 383837 11824359 ~ 11837872 (+)
G473155 NA non-coding upstream 860 11426291 ~ 11429303 (+)
G473123 NA non-coding upstream 8506 11373194 ~ 11421657 (+)
G473150 trim36 non-coding upstream 13802 11409917 ~ 11416361 (+)
G473115 NA non-coding upstream 63006 11366498 ~ 11367157 (+)
G473114 NA non-coding upstream 64003 11365068 ~ 11366160 (+)
G473167 NA non-coding downstream 4595 11445117 ~ 11446624 (+)
G473173 NA non-coding downstream 16970 11457492 ~ 11457723 (+)
G473175 NA non-coding downstream 18529 11459051 ~ 11459276 (+)
G473176 NA non-coding downstream 19368 11459890 ~ 11460091 (+)
G473177 NA non-coding downstream 20123 11460645 ~ 11460941 (+)
G473070 NA other upstream 150898 11278338 ~ 11279265 (+)
G472364 NA other upstream 1149040 10280306 ~ 10281123 (+)
LOC110525088 LOC106585913 other upstream 2156210 9228570 ~ 9273994 (+)
G470770 NA other upstream 2204650 9223351 ~ 9225513 (+)
G470599 NA other upstream 2619220 8809973 ~ 8810943 (+)
G474321 NA other downstream 747766 12188288 ~ 12190572 (+)
G474851 NA other downstream 1063238 12503760 ~ 12504119 (+)
G474949 NA other downstream 1271784 12712306 ~ 12713298 (+)
G475692 NA other downstream 1873157 13313679 ~ 13313969 (+)
G476234 NA other downstream 2544318 13984840 ~ 13985259 (+)

Expression


Co-expression Network