G473177


Basic Information

Item Value
gene id G473177
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 11460645 ~ 11460941 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU537963
TAAGTGTGAGGGAATGTGCAAAATGAGCGTGAATGAAACCTTTGTGGAGTTTAATAGGACATGTAAATTAGTCATTTTACACTGGAATCtgatagcagggtgtaatggtgtCAGTATCAGTTTTGTGTGATGATACATCTGTTTAATAGTGTGGCTCACCACCAGGACAAATAATCTCCAACTAACACCATAAAAGAACTGGCAAGGGCACTGCCCTTGCTGCCCAGAGGAAGACTGGGAGACTAGAATAGCTCTGAAATGGCATTGGTGTAATCATGCCACCTCTTCCTATAAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU537963 True 297 lncRNA 0.41 1 11460645 11460941

Neighbor

gene id symbol gene type direction distance location
LOC110525250 hpgds coding upstream 951516 10497758 ~ 10509129 (+)
prf1.5 LOC106585834 coding upstream 976310 10480130 ~ 10484335 (+)
mpeg1.1 mpeg1 coding upstream 981425 10476333 ~ 10479220 (+)
LOC110525245 LOC106585833 coding upstream 1000000 10459637 ~ 10460645 (+)
aptx LOC100136186 coding upstream 1074300 10384908 ~ 10386345 (+)
LOC110525261 ap3s1 coding downstream 77336 11538277 ~ 11561607 (+)
commd10 comda coding downstream 101526 11562467 ~ 11604688 (+)
LOC118965115 NA coding downstream 283728 11744669 ~ 11744803 (+)
LOC110525262 dmxl1 coding downstream 285072 11746013 ~ 11809089 (+)
LOC110525265 LOC106585816 coding downstream 363418 11824359 ~ 11837872 (+)
G473176 NA non-coding upstream 554 11459890 ~ 11460091 (+)
G473175 NA non-coding upstream 1369 11459051 ~ 11459276 (+)
G473173 NA non-coding upstream 2922 11457492 ~ 11457723 (+)
G473167 NA non-coding upstream 14021 11445117 ~ 11446624 (+)
G473158 pggt1b non-coding upstream 20123 11430163 ~ 11440522 (+)
G473702 NA non-coding downstream 9801 11470742 ~ 11475365 (+)
G473709 NA non-coding downstream 17385 11478326 ~ 11478543 (+)
G473739 NA non-coding downstream 49756 11510697 ~ 11511037 (+)
G473744 NA non-coding downstream 58103 11519044 ~ 11519275 (+)
G473748 NA non-coding downstream 61356 11522297 ~ 11576779 (+)
G473070 NA other upstream 181380 11278338 ~ 11279265 (+)
G472364 NA other upstream 1179522 10280306 ~ 10281123 (+)
LOC110525088 LOC106585913 other upstream 2186692 9228570 ~ 9273994 (+)
G470770 NA other upstream 2235132 9223351 ~ 9225513 (+)
G470599 NA other upstream 2649702 8809973 ~ 8810943 (+)
G474321 NA other downstream 727347 12188288 ~ 12190572 (+)
G474851 NA other downstream 1042819 12503760 ~ 12504119 (+)
G474949 NA other downstream 1251365 12712306 ~ 12713298 (+)
G475692 NA other downstream 1852738 13313679 ~ 13313969 (+)
G476234 NA other downstream 2523899 13984840 ~ 13985259 (+)

Expression


Co-expression Network