XLOC_024101 (CR354549.6)


Basic Information

Item Value
gene id XLOC_024101
gene name CR354549.6
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 23140524 ~ 23146581 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047813
TGCTAACAGTGAATATCTCATCACAGTGACAAAGCAGGACACTACATGAAAATGATTTTGAAGAATGTATTTAGGCGTTCATATTCTATTCTAACATTTGTTGCAGTATACATTTTACAACATTTACACTACAACTgcaaaagtgtatttttaagcatttttgtaCTACTCAAAATCAAGTTTCTATTTTCTAATGCATCTAAATATTTCAGCATCTCCTGCCAGTACAAGCACTTTTACAACCGAGTCTCAAACAGCAGAACCTACAACCTCTGCCACAACAAACCCTCCATCAACTGTGTCTCCAACATCAGCTGCTTCAAGTGAGTATTTAATTCATTGACCATTGTGTGAACATTTTAA
>TCONS_00047814
CAGCAGCCTCTGCCACAACAAACCCTCCATCAACTGTGTCTCCAACATCAGCTGCTTCAACATCTCATCCCAGTACAAGCTCTTCTACAACTGAGTCTCAAACAGCAGAACCTACAAGTAAGTAATGATATTATaatttatgtatataattttaataatcagCAGTTCGGGTGTTTCAAATCACCTTCTGAGCAATCAAGTATTAGTATCTGCAATAATAAGAAATATGTTCCTGTCATGATGTCCCAGCAGTTTCTGCTACAACAAACTCTCCATCAACTGTGTCTCCAACATCAGCTcctttaagtgagtttttttttaaattcatagattattgtgtgaacatttcaataaaaaaatgataattatagGTCCAACTTAATTAGAGGTGGTGGAATTTTGCTGTGTTTGTTTTCTATTATAACATATTTTTGTATGTTAGGGCTCTACTCATTATTAACTTCTGTGATGATTTTATGCAAAATGGTTTAAATGGTTTAATGGTTTTTAatggtttaatgtttttttttaatacttctaCATTTTATTAGCACCCCCTGCCAGTACAAGCTCCTCTACAACTGAATCTCAAACAGCAGAACCTACAAGTAAGTATTGCATATGTGCAGTTgtcaaaaaaagatttattttatctttgccattatgacagtaaataatatttgactagatatttttcgagacacttctatacaacttaaagtgacattcaaaggcttaactaggttaattagtttaactaggcaggttagggtaattagacaagttattgtgtaatgatggtttgtctgtagactatcgagaaaaaaatatagcttaaagttgctaataattttgtccctgaaatagttttaaaaatttttttatccTATTCTTTTATtcgagccaaa
>TCONS_00047815
ATTTACAGTGTCTGAACAATATTTCTACAATGTTTACcatatttttaatgcattaaatatttCAGCATCTCATCCCAGTACAAGCTCTTCTACAACTGAGTCTCAAACAGCAGAACCTACAATTTCTGCTACAACAAACTCTCCATCAACTGTGTCTCCAACATCAGCTcctttaaCACCCCCTGCCAGTACAAGCTCCTCTACAACTGAATCTCAAACAGCAGAACCTACAAGTAAGTATTGCATATGTGCAGTTgtcaaaaaaagatttattttatctttgccattatgacagtaaataatatttgactagatatttttcgagacacttctatacaacttaaagtgacattcaaaggcttaactaggttaattagtttaactaggcaggttagggtaattagacaagttattgtgtaatgatggtttgtctgtagactatcgagaaaaaaatatagcttaaagttgctaataattttgtccctgaaatagttttaaaaatttttttatccTATTCTTTTATtcgagccaaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117597

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047813 False 363 lncRNA 0.35 2 23140524 23145469
TCONS_00047814 False 908 lncRNA 0.32 2 23145370 23146581
TCONS_00047815 True 533 lncRNA 0.33 3 23145669 23146581

Neighbor

gene id symbol gene type direction distance location
XLOC_024100 CR396595.4 coding upstream 9385 23128698 ~ 23131139 (+)
XLOC_024099 CR396595.3 coding upstream 27939 23064627 ~ 23112585 (+)
XLOC_024098 NA coding upstream 159899 22976589 ~ 22980625 (+)
XLOC_024097 kcnj11 coding upstream 285661 22853718 ~ 22854863 (+)
XLOC_024096 abcc8 coding upstream 291338 22719852 ~ 22849186 (+)
XLOC_024102 CR354549.8 coding downstream 1021 23147602 ~ 23151051 (+)
XLOC_024103 CR354549.2 coding downstream 11041 23157622 ~ 23158887 (+)
XLOC_024104 CR354549.4 coding downstream 13495 23160076 ~ 23163371 (+)
XLOC_024105 CR354549.1 coding downstream 17371 23163952 ~ 23165024 (+)
XLOC_024106 CR354549.12 coding downstream 18610 23165191 ~ 23168230 (+)
XLOC_023973 CR762411.1 misc upstream 7922415 15217824 ~ 15218109 (+)
XLOC_024093 NA non-coding upstream 643402 22491993 ~ 22497122 (+)
XLOC_024092 CR759863.2 non-coding upstream 648660 22489689 ~ 22491864 (+)

Expression


Co-expression Network