G473791


Basic Information

Item Value
gene id G473791
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 11607869 ~ 11608234 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU538630
cattcagccacaagagcattagtgactttgatcactgatgttgggcgattaggcctgaatTGCAGTAGGcgttccaattcaccccaaaggtATTCAATGGGGTTGACGTCAGGGCCCTGTGCAGGCCAGACGAGTTCTTCCATACCGATGTTGACAAACCATCtctgcatggacctcgctttgtgcacgtagcattgtgatgctgaaacaggaaagggccttcccccaaactgttgccacaaagttggaagcacagaatcgtctagaatataAGTGTATCATAtaacgttaagatttcccttcactggaacaaaggggcctagtccgaaccatgaaaaacagcccctgaccattattcctcctcca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU538630 True 366 lncRNA 0.48 1 11607869 11608234

Neighbor

gene id symbol gene type direction distance location
commd10 comda coding upstream 3181 11562467 ~ 11604688 (+)
LOC110525261 ap3s1 coding upstream 46262 11538277 ~ 11561607 (+)
LOC110525250 hpgds coding upstream 1098740 10497758 ~ 10509129 (+)
prf1.5 LOC106585834 coding upstream 1123534 10480130 ~ 10484335 (+)
mpeg1.1 mpeg1 coding upstream 1128649 10476333 ~ 10479220 (+)
LOC118965115 NA coding downstream 136435 11744669 ~ 11744803 (+)
LOC110525262 dmxl1 coding downstream 137779 11746013 ~ 11809089 (+)
LOC110525265 LOC106585816 coding downstream 216125 11824359 ~ 11837872 (+)
pheta1 LOC106585851 coding downstream 245662 11853896 ~ 11857562 (+)
sh2b3 LOC106585852 coding downstream 280703 11888937 ~ 11950017 (+)
G473790 NA non-coding upstream 54 11607571 ~ 11607815 (+)
G473789 NA non-coding upstream 740 11606917 ~ 11607129 (+)
G473785 NA non-coding upstream 5831 11601652 ~ 11602038 (+)
G473783 NA non-coding upstream 10936 11596352 ~ 11596933 (+)
G473748 NA non-coding upstream 31090 11522297 ~ 11576779 (+)
G473796 NA non-coding downstream 4858 11613092 ~ 11613389 (+)
G473799 NA non-coding downstream 6400 11614634 ~ 11614911 (+)
G473801 NA non-coding downstream 9278 11617512 ~ 11618242 (+)
G473806 NA non-coding downstream 14882 11623116 ~ 11623353 (+)
G473819 NA non-coding downstream 37657 11645891 ~ 11646146 (+)
G473070 NA other upstream 328604 11278338 ~ 11279265 (+)
G472364 NA other upstream 1326746 10280306 ~ 10281123 (+)
LOC110525088 LOC106585913 other upstream 2333916 9228570 ~ 9273994 (+)
G470770 NA other upstream 2382356 9223351 ~ 9225513 (+)
G470599 NA other upstream 2796926 8809973 ~ 8810943 (+)
G474321 NA other downstream 580054 12188288 ~ 12190572 (+)
G474851 NA other downstream 895526 12503760 ~ 12504119 (+)
G474949 NA other downstream 1104072 12712306 ~ 12713298 (+)
G475692 NA other downstream 1705445 13313679 ~ 13313969 (+)
G476234 NA other downstream 2376606 13984840 ~ 13985259 (+)

Expression


Co-expression Network