G474159


Basic Information

Item Value
gene id G474159
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 11952536 ~ 11953870 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU539040
TTGGTGCTAAACCTCAAGAGATGTGACTGAAAAGGGTTTGGAAGGAGACATGAAACCCAACACACTCAAGTTGTACAAAACCTTTCACACAATGGTTATGATACGACAGTTTGTCTACCAAATAACATTTACACAACCCTTATGTCAAAAATATCACCATTGTATCAATTGTAAAAACCTGAATGTGTACAGGGCCAAAGATTAGTGTTAATTTCCCATCAGCATGAAACAGAAAGGCCCTTACCTGTGCTCTCCATCTACCAGGAAGTAACGGATAACTCATCCTGGTCCTTTCTGAAGGCCTTTCGTTTGTAGATGCTACATTTGAATGTTTGTCTATGGCTTCTTAATCATCGAGCTCTAGAAAGCGGACCTCACTAAGAACCCATGTGGTGCCTTAACACAGTGTGTGTACGCAACCACTCTGGTATACATTTGTTTATTAAACACTTTGACAATTCTCTAAACACACCCTTCACTTTTCTGTACGTAGCTCTTTCCCTTTGCTTAACACTAACTTAGCAGCGACTCAACCTCGATGTCATGCAGTGTTTATGGTAATCATAGGGTTTCCTGTTTAAGAAATGCACAAAGGCAGGTTGATCTTCTTAGACATGATCAGgatattttattttcataattGAGCTACATGTAATCAAGGGTATCTTCCAATATTGAAACTGACATTAAGTGTTTAGTACGGTTGGTCTCCTGCACTTAAGTTTAAACTAAACCCAAACGTCTGTTCTGCAAAAGGAAATGAACGGTATCATTGACTTATCAGtccctctctgacctgtagaGAGACTGCTTTTGCTTTAACCCTTTGAACTTCCGGACCTGACGTTAGAAATTAGTGCAATAACATATTTCCCATGATTTGGCTTAAAGCGTTGTTCAATATTATAGCTTAACCTGTACATTGGAGAAACAAAATTCATACTTGGCATCCAGCAATAAAGATCACCCCTACTTACATCAGTGTCATGGCAAGCTTCGAGTGCATTCCGTCACTGCAGACGTGGGTTGCTCACTCTTCAACTGTCTGCACATAGGTTTGTTTTATGCTCCCAAGGAAACAGTGCAAATGGATTGGcatcaaacatggtttctatGCCAATCCTCACCAATTAAAAAGGTGCCTCCAACCTCCTGTGCTCAGGTATTAGAACATTTGCTTGCGAGCATTTATTTTGGCCCCTCAGCGACATTTGTACATTGAGTTCAACTGATGAACGCATGTCTTCTCAATACTGTTGATTCTATTTATGTATTAGCACTAACATTCCATCACTAAGTAAACCACCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU539040 True 1309 lncRNA 0.40 2 11952536 11953870

Neighbor

gene id symbol gene type direction distance location
sh2b3 LOC106585852 coding upstream 2519 11888937 ~ 11950017 (+)
pheta1 LOC106585851 coding upstream 94974 11853896 ~ 11857562 (+)
LOC110525265 LOC106585816 coding upstream 114664 11824359 ~ 11837872 (+)
LOC110525262 dmxl1 coding upstream 143447 11746013 ~ 11809089 (+)
LOC118965115 NA coding upstream 207733 11744669 ~ 11744803 (+)
LOC110525268 mapkapk5 coding downstream 34492 11988362 ~ 12010362 (+)
LOC110525274 idnk coding downstream 290511 12244381 ~ 12247297 (+)
LOC110525277 LOC106585857 coding downstream 318691 12236437 ~ 12283249 (+)
LOC118964798 NA coding downstream 344503 12298373 ~ 12299383 (+)
LOC110525280 LOC106585811 coding downstream 606446 12560316 ~ 12564798 (+)
G474160 NA non-coding upstream 1400 11950831 ~ 11951136 (+)
G474165 NA non-coding upstream 2140 11950081 ~ 11950396 (+)
G474193 NA non-coding upstream 60159 11892164 ~ 11892377 (+)
G474189 NA non-coding upstream 67943 11884234 ~ 11884593 (+)
G474221 NA non-coding downstream 32845 11986715 ~ 11987031 (+)
G474230 NA non-coding downstream 58594 12012464 ~ 12012773 (+)
G474237 NA non-coding downstream 72723 12026593 ~ 12026830 (+)
G474240 NA non-coding downstream 77849 12031719 ~ 12031949 (+)
G473070 NA other upstream 673271 11278338 ~ 11279265 (+)
G472364 NA other upstream 1671413 10280306 ~ 10281123 (+)
LOC110525088 LOC106585913 other upstream 2678583 9228570 ~ 9273994 (+)
G470770 NA other upstream 2727023 9223351 ~ 9225513 (+)
G470599 NA other upstream 3141593 8809973 ~ 8810943 (+)
G474321 NA other downstream 234418 12188288 ~ 12190572 (+)
G474851 NA other downstream 549890 12503760 ~ 12504119 (+)
G474949 NA other downstream 758436 12712306 ~ 12713298 (+)
G475692 NA other downstream 1359809 13313679 ~ 13313969 (+)
G476234 NA other downstream 2030970 13984840 ~ 13985259 (+)

Expression


Co-expression Network