G474365


Basic Information

Item Value
gene id G474365
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 12250488 ~ 12252286 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU539312
tttccatttcactttaTTAACCAGCACACAGGAGAATGAATACAAATTAAATGCTGAAATCAAAAAGATGAAGGCTACAATTTTCCAAGGCAGTTGGTATCATCACCATACTGGCAATGTGCTAAGAAAGTGACTTCAGTAATTGCTTTGCTGAGCACTCTAAAAGATTCTACTCTATTCATTCAGGTATATTATTAAGATTCCATTCCTGCTCCCGTTTTTTTTGCATGTACAGTACTTCAATGGCTCCTGAATTGTATATTTTCTCTCAAGGAGGCAGAAGAGTTGAGTCAACAGTACCCTCCAGTGGGACAGAGCACATGGTTTTTGTTACACTAGCCAGTTTCAGTGGTGCAGTACAATTAATACATTAAAGACATGAAAAATATGAAACATGGGGTTTAGAAAGAAAAACACTTCATCCTCCATATATAAGCCTAACCGTAGGAGCATAAAGAACATACTATGAGGGTTTGAACTTTAGACAATAAAACAACATAGCCTATAATAACACACAAGTCAAAAGTACATTTTGTAAGAGTTAATAAAATGCACAGAGCTACATAGAGGTAAATAGAGCTACATAGTGAGTCATTGTATTATCAAATGGGAATACATCTAAAGCCACCGGCACACTTATTCTTGATTGGACATCACTGCTACATCAATATCAGTGCTACAAGCTTGCACTCATATCCAAGGCTGTGCAAGCGTGATACTGCAGCGTGATACGAGGGGCTGCTATTGAAGAAACTTGTCAGCAAAGGCCGGCTCCATGTAACAGTCAATTGAGCAGCCCACTTCCAGTCTATACCACAATGAAGTGGCAAAACTGGCCTCCCCTAGTCTATACCACAATGAAGTGGCAAAACTGGCCTCCCCTAGTCTATACCACAATGAAGTGGCAAAACTGGCCTCCCCTAGTCTATACCACAATGAAGTGGCAAAACTGGCCTCCCCTAGTCTATACCACAATGAAGTGGCAAAACTGGCCTCCCCTAGTCTATACCACAATGAAGTGGCAAAACTGGCCTCCCCTAGTCTATACCACAATGAAGTGGTAAAAAGAACACATAGCATTTAGTGCATTATGAATGCAGTCTGTTCACattacacatatatacacacacacaactgagacTGCTGTACACATGCTCTCAAGGGTCACCAGTAGGGAACCCTTGGGTTATTATCCTGATTTGAGTTTAAGGCCTTGGTAGCAGCAGGGAAATACATATTGAGACTAGCAGCATATTCACTCTTAAGAGTCTTGGATGGGACTCTTAGGTAGGATGGGACTCTTAGGTAGGATGGGACTCTTAGGTAGGATGGGACTCTTAGGTAGGATGGGACTCTGCATAAAGGAATGTGGCAGAAGCCAGCATGATCCTGATTAGAGCCTGAACCAACTAAGGCCATTCAGAACATACAGCACAGACAGGCCTGCACTTCACAGTTCAGCAGCTTACATATACAATATAAATGGCATTCAGGAGTGCATGTTTCACTAGTTCTCTGTGAGTGAAGAATGTGCAAGCATCTGATCGTACAACTGCGTGATTGTACAAGTGAGTGTGCGCACGTGAATTTGTTAATTGTATGTGCacatgtgaagtgtgtgtgtattacaagGGTGGCGAGTCCAGCAGTCGTTCTACAGCGGCGTTGACGTCTCCCCCGGTAGCGATGAGGGCCTGCAGGTTGGCCTCTGGGTTGAGGAAGCCCATGGTCGTCAGCTGCTCCACCTGCTCCTGGAACAGCAG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU539312 True 1763 lncRNA 0.43 2 12250488 12252286

Neighbor

gene id symbol gene type direction distance location
LOC110525274 idnk coding upstream 3191 12244381 ~ 12247297 (+)
LOC110525268 mapkapk5 coding upstream 240469 11988362 ~ 12010362 (+)
sh2b3 LOC106585852 coding upstream 300471 11888937 ~ 11950017 (+)
pheta1 LOC106585851 coding upstream 392926 11853896 ~ 11857562 (+)
LOC110525265 LOC106585816 coding upstream 412616 11824359 ~ 11837872 (+)
LOC110525277 LOC106585857 coding downstream 20275 12236437 ~ 12283249 (+)
LOC118964798 NA coding downstream 46087 12298373 ~ 12299383 (+)
LOC110525280 LOC106585811 coding downstream 308030 12560316 ~ 12564798 (+)
LOC110525282 LOC106585808 coding downstream 331685 12583971 ~ 12586483 (+)
hspb11 hspb11 coding downstream 463607 12715893 ~ 12717368 (+)
G474336 NA non-coding upstream 34026 12216100 ~ 12216462 (+)
G474323 NA non-coding upstream 57598 12191784 ~ 12192890 (+)
G474314 NA non-coding upstream 73722 12176345 ~ 12176766 (+)
G474307 NA non-coding upstream 89083 12158717 ~ 12161405 (+)
G474275 NA non-coding upstream 146034 12104014 ~ 12104454 (+)
G474354 NA non-coding downstream 10639 12262925 ~ 12271443 (+)
G474392 NA non-coding downstream 52808 12305094 ~ 12305349 (+)
G474475 NA non-coding downstream 178051 12430337 ~ 12430812 (+)
G474477 NA non-coding downstream 180681 12432967 ~ 12433167 (+)
G474478 NA non-coding downstream 181189 12433475 ~ 12433876 (+)
G474321 NA other upstream 59916 12188288 ~ 12190572 (+)
G473070 NA other upstream 971223 11278338 ~ 11279265 (+)
G472364 NA other upstream 1969365 10280306 ~ 10281123 (+)
LOC110525088 LOC106585913 other upstream 2976535 9228570 ~ 9273994 (+)
G470770 NA other upstream 3024975 9223351 ~ 9225513 (+)
G474851 NA other downstream 251474 12503760 ~ 12504119 (+)
G474949 NA other downstream 460020 12712306 ~ 12713298 (+)
G475692 NA other downstream 1061393 13313679 ~ 13313969 (+)
G476234 NA other downstream 1732554 13984840 ~ 13985259 (+)
G476248 NA other downstream 1744798 13997084 ~ 14015564 (+)

Expression


Co-expression Network