G474840


Basic Information

Item Value
gene id G474840
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 12485356 ~ 12485702 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU539841
ATACATGACATATTACTGATACATTCATAACATGGGAACATCCATAACTATGAGTGATCTAACTGTGTCTGTGACAAATGTATATCAACAGTTGATGATTGACTCGCACCAACAGCAGTTTGATACAGTGTTTTTACATTATGCCACAAACTGAACCTATTTCCAACAGATTATAAGCAAAACGTCTTGTGTTTGTCAACTATGTGTTTTTACAGATATCTGCAGTTCTTGATTCATGTACTCTGGATGAGAATTGGCATTAGGCAGTATGATGTGAAAATCAGTTTGAGGTTCTTCTGGGGTGgcacaggggtgtgtgtgtttgtgtgtctctccctgCACCATAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU539841 True 347 lncRNA 0.39 1 12485356 12485702

Neighbor

gene id symbol gene type direction distance location
LOC118964798 NA coding upstream 185973 12298373 ~ 12299383 (+)
LOC110525277 LOC106585857 coding upstream 202731 12236437 ~ 12283249 (+)
LOC110525274 idnk coding upstream 238059 12244381 ~ 12247297 (+)
LOC110525268 mapkapk5 coding upstream 475337 11988362 ~ 12010362 (+)
sh2b3 LOC106585852 coding upstream 535339 11888937 ~ 11950017 (+)
LOC110525280 LOC106585811 coding downstream 74614 12560316 ~ 12564798 (+)
LOC110525282 LOC106585808 coding downstream 98269 12583971 ~ 12586483 (+)
hspb11 hspb11 coding downstream 230191 12715893 ~ 12717368 (+)
LOC110525291 LOC106585801 coding downstream 396902 12882604 ~ 12888336 (+)
arsk arsk coding downstream 402783 12888485 ~ 12895776 (+)
G474481 NA non-coding upstream 47176 12437953 ~ 12438180 (+)
G474478 NA non-coding upstream 51480 12433475 ~ 12433876 (+)
G474477 NA non-coding upstream 52189 12432967 ~ 12433167 (+)
G474475 NA non-coding upstream 54544 12430337 ~ 12430812 (+)
G474392 NA non-coding upstream 180007 12305094 ~ 12305349 (+)
G474847 NA non-coding downstream 12084 12497786 ~ 12498004 (+)
G474852 NA non-coding downstream 18460 12504162 ~ 12577127 (+)
G474858 NA non-coding downstream 36717 12522419 ~ 12522878 (+)
G474945 NA non-coding downstream 220663 12706365 ~ 12776504 (+)
G474948 LOC106585806 non-coding downstream 228074 12713776 ~ 12715008 (+)
G474321 NA other upstream 294784 12188288 ~ 12190572 (+)
G473070 NA other upstream 1206091 11278338 ~ 11279265 (+)
G472364 NA other upstream 2204233 10280306 ~ 10281123 (+)
LOC110525088 LOC106585913 other upstream 3211403 9228570 ~ 9273994 (+)
G470770 NA other upstream 3259843 9223351 ~ 9225513 (+)
G474851 NA other downstream 18058 12503760 ~ 12504119 (+)
G474949 NA other downstream 226604 12712306 ~ 12713298 (+)
G475692 NA other downstream 827977 13313679 ~ 13313969 (+)
G476234 NA other downstream 1499138 13984840 ~ 13985259 (+)
G476248 NA other downstream 1511382 13997084 ~ 14015564 (+)

Expression


Co-expression Network